Job Description Dangers_of_Intensive Confidence 99.53% Date Sun Sep 7 17:29:03 BST 2014 Rank 17 Aligned Residues 60 % Identity 72% Template c3j5mI_ PDB info PDB header:viral protein/immune system Chain: I: PDB Molecule:bg505 sosip gp120; PDBTitle: cryo-em structure of the bg505 sosip.664 hiv-1 env trimer with 3 pgv042 fabs Resolution 5.80 Å Model Dimensions (Å) X:35.857 Y:57.535 Z:38.422

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		A	K	E	A	A	V	Q	L	N	T	S	V	Q	I	N	C	T	R	P	N	Y	N	K	R	K	R	I	H	I	G	R	G	P	G	R	A	F	Y	T	T	G	K	I	.	G	N	M	R	Q	A	H	C	N	I	S	R	A	K	W	N
Query Conservation																																													.
Alig confidence																															.	.													.
Template Conservation																															.	.
Template Sequence		A	K	N	I	L	V	Q	F	N	T	P	V	Q	I	N	C	T	R	P	N	N	N	T	R	K	S	I	R	I	.	.	G	P	G	Q	A	F	Y	A	T	G	D	I	I	G	D	I	R	Q	A	H	C	N	V	S	K	A	T	W	N
Template Known Secondary structure		T	S																	S						S					.	.		T	T					S			S				S
Template Predicted Secondary structure																															.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		285	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D