Job Description Dangers_of_Intensive Confidence 96.29% Date Sun Sep 7 17:29:03 BST 2014 Rank 27 Aligned Residues 33 % Identity 82% Template c3dnlB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:hiv-1 envelope glycoprotein gp120; PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-2 bound state Resolution 20.00 Å

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	A	A	V	Q	L	N	T	S	V	Q	I	N	C	T	R	P	N	Y	N	K	R	K	R	I	H	I	G	R	G	P	G	R	A	F	Y	T	T	G	K	I	G	N	M	R	Q	A	H	C	N	I	S	R	A	K	W	N	N
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	T	I	I	V	Q	L	N	T	S	V	E	I	N	C	T	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	C	N	I	S	R	A	K	W	N	N
Template Known Secondary structure		T	S							S	S								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																														300	.	.	.	.	.	.	.	.	.	310	.
		286	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		341	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D