Using Phyre2 to predict protein structure on the web
Tuesday May 21st 2013
Pre-calculated results
Summary table for targets <1000 residues
Summary for very long sequences (14036,14037,14044,14045,14046,14051)
| The batch summary table (above) is a good way to get a quick visual overview of which sequences were easy and hard to model, and what kind of coverage you've got. Direct links to individual results below: |
Individual links
| Further examples | |
|---|---|
| Normal mode example | |
| Intensive mode example | |
| BackPhyre example | |
| One to One Threading example | |
| Common issues | |
| Example_1 | This illustrates what happens when Phyre2 can't find anything at all. |
| Example_2 | Only 1 out of 2 domains could be modelled, but notice all the predicted disorder? The missing domain is probably not meaningfully modellable, even if there was a template detected |
| Example_3 | This is a good candidate for intensive mode - confident hits covering practically all the sequence - look at the domain analysis table and scroll down. Intensive results here |
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