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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2016 Jan 23

Fold library idPDB HeaderMoleculeTitle
c5a94B_ 1.99 hydrolase Chain: B: putative retaining b-glycosidase;
c5firC_ 2.84 hydrolase Chain: C: 5'-3' exoribonuclease 2 homolog;
c5es8A_ 2.55 ligase Chain: A: linear gramicidin synthetase subunit a;
c5aa5D_ 2.497 oxidoreductase Chain: D: nife-hydrogenase small subunit, hofk;
c5ebbA_ 2.60 hydrolase Chain: A: acid sphingomyelinase-like phosphodiesterase 3a;
c5aa5C_ 2.497 oxidoreductase Chain: C: nife-hydrogenase large subunit, hofg;
c2n4pA_ UNK dna binding protein Chain: A: tar dna-binding protein 43;
c4y6tD_ 2.40 structural protein Chain: D: coat protein;
c4v1bB_ 2.69 sugar binding protein Chain: B: carbohydrate binding module;
c4y68A_ 2.21 hydrolase Chain: A: putative nisin-resistance protein;
c5fgoA_ 2.60 dna binding protein Chain: A: cg1507-pb, isoform b;
c5flmI_ 3.40 transcription Chain: I: dna-directed rna polymerase ii subunit rpb9;
c5firH_ 2.84 hydrolase Chain: H: paxt-1;
c5eroB_ 2.55 transferase Chain: B: fusicoccadiene synthase;
c5hdaC_ 2.39 immune system Chain: C: zinc finger mynd domain-containing protein 11;
c5c8wB_ 1.80 transferase Chain: B: cgmp-dependent protein kinase 2;
c5ekqA_ 3.39 membrane protein Chain: A: outer membrane protein assembly factor bama;
c4v1lC_ 1.75 sugar binding protein Chain: C: carbohydrate binding module;
c5edvA_ 3.48 ligase/transferase Chain: A: e3 ubiquitin-protein ligase rnf31;
c5f1bC_ 2.30 viral protein/transport protein Chain: C: niemann-pick c1 protein;
c4znoB_ 1.86 sugar binding protein Chain: B: natterin-like protein;
c5fipA_ 1.88 hydrolase Chain: A: gh5 cellulase;
c4xzvH_ 3.58 apoptosis Chain: H: protein slowmo homolog 1;
c5flmA_ 3.40 transcription Chain: A: dna-directed rna polymerase;
c5c7tB_ 2.06 hydrolase Chain: B: nudf protein;
c2n2yA_ UNK cell cycle Chain: A: meiosis-expressed gene 1 protein;
c4xa2A_ 1.98 cell adhesion Chain: A: maltose-binding periplasmic protein,mbp-pila: c;
c5ermA_ 2.30 lyase Chain: A: fusicoccadiene synthase;
c5dl2A_ 3.50 transcription regulator Chain: A: regulator of protease b (ropb);
c4xzsA_ 2.12 apoptosis Chain: A: maltose-binding periplasmic protein,tp53-regulated
c5bz3A_ 2.30 transport protein Chain: A: na(+)/h(+) antiporter;
c5dolB_ 2.70 replication Chain: B: initiation-control protein yaba;
c2my5A_ UNK transport protein Chain: A: peptidyl carrier protein;
c4z85A_ 1.70 oxidoreductase Chain: A: 2-nitrobenzoate nitroreductase;
c4xfqB_ 1.65 hydrolase Chain: B: pedv main protease;
c5aexB_ 3.20 membrane protein Chain: B: ammonium transporter mep2;
c5flmB_ 3.40 transcription Chain: B: dna-directed rna polymerase ii subunit rpb2;
c5fojA_ 2.80 virus Chain: A: nanobody;
c5bv6A_ 1.94 transferase Chain: A: cgmp-dependent protein kinase 2;
c5edvB_ 3.48 ligase/transferase Chain: B: e3 ubiquitin-protein ligase rnf31;
c2n8iA_ UNK de novo protein Chain: A: designed protein da05;
c3jckA_ 3.50 hydrolase Chain: A: 26s proteasome regulatory subunit rpn3;
c5faiA_ 1.80 transferase Chain: A: ribosomal rna small subunit methyltransferase nep1;
c4d74A_ 1.57 hydrolase Chain: A: protein-tyrosine-phosphatase amsi;
c5flmC_ 3.40 transcription Chain: C: dna-directed rna polymerase ii subunit rpb3;
c4xq6A_ 2.00 oxidoreductase Chain: A: dihydroorotate dehydrogenase (quinone);
c2n93A_ UNK lipid binding protein Chain: A: fatty acid-binding protein;
c5flmE_ 3.40 transcription Chain: E: dna-directed rna polymerases i, ii, and iii subunit
c5b0vA_ 2.81 viral protein Chain: A: matrix protein vp40;
c5aexJ_ 3.20 membrane protein Chain: J: ammonium transporter mep2;
c4x57D_ 2.80 ligase/protein binding Chain: D: membrane-anchored ubiquitin-fold protein 3;
c5flmK_ 3.40 transcription Chain: K: dna-directed rna polymerase ii subunit rpb11;
c5ffpB_ 2.50 antitoxin Chain: B: immunity 23 family protein;
c5flmL_ 3.40 transcription Chain: L: dna-directed rna polymerases i, ii, and iii subunit
c5aezA_ 1.47 membrane protein Chain: A: mep2;


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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