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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Dec 19

Fold library idPDB HeaderMoleculeTitle
c5efzC_ hydrolase Chain: C: homoserine o-acetyltransferase; monoclinic structure of the acetyl esterase mekb
c5ey8D_ ligase Chain: D: acyl-coa synthase; structure of fadd32 from mycobacterium smegmatis complexed to ampc20
c5f46A_ transferase Chain: A: aminoglycoside acetyltransferase hmb0020; crystal structure of an aminoglycoside acetyltransferase hmb0020 from2 an uncultured soil metagenomic sample, apoenzyme form
c5fn3G_ hydrolase Chain: G: poly ala chain; cryo-em structure of gamma secretase in class 1 of2 the apo-state ensemble
c5djbD_ structural protein Chain: D: microcompartments protein; structure of the haliangium ochraceum bmc-h shell protein
c5cwiA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr18
c4z8nB_ cell invasion Chain: B: reticulocyte-binding protein 2a; crystal structure of the erythrocyte-binding domain from plasmodium2 vivax reticulocyte-binding protein 2a (pvrbp2a)
c3x2vS_ transferase/peptide Chain: S: substrate peptide; michaelis-like complex of camp-dependent protein kinase catalytic2 subunit
c4yamA_ transferase Chain: A: beta-etherase; crystal structure of lige-apo form from sphingobium sp. strain syk-6
c4zw0A_ lyase Chain: A: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz; crystal structure of beta-hydroxyacyl-acyl carrier protein dehydratase2 (fabz) from candidatus asiaticum
c5eszG_ immune system Chain: G: 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase, crystal structure of broadly neutralizing antibody ch04, isolated from2 donor ch0219, in complex with scaffolded trimeric hiv-1 env v1v23 domain from the clade ae strain a244
c5c2iC_ oxidoreductase Chain: C: alr1585 protein; crystal structure of anabaena sp. dyp-type peroxidese (anapx)
c5evmF_ viral protein Chain: F: fusion glycoprotein f0; crystal structure of nipah virus fusion glycoprotein in the prefusion2 state
c4yomA_ transferase Chain: A: serine/threonine-protein kinase brsk2; structure of sad kinase
c5cwfC_ de novo protein Chain: C: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr8
c4yxzA_ de novo protein Chain: A: dtor_9x31l; computationally designed left-handed alpha/alpha toroid with 9 repeats
c4xwwA_ rna binding protein/rna Chain: A: dr2417; crystal structure of rnase j complexed with rna
c5c2gD_ lyase Chain: D: form ii rubisco; gws1b rubisco: form ii rubisco derived from uncultivated2 gallionellacea species (cabp-bound).
c5dcaA_ hydrolase Chain: A: pre-mrna-splicing helicase brr2; crystal structure of yeast full length brr2 in complex with prp8 jab12 domain
c5e44A_ transcription Chain: A: fnr regulator; crystal structure of holo-fnr of a. fischeri
c5ezbB_ transport protein Chain: B: chicken prestin stas domain,chicken prestin stas domain; chicken prestin stas domain
c5fn4G_ hydrolase Chain: G: poly ala chain; cryo-em structure of gamma secretase in class 2 of2 the apo-state ensemble
c4ynzB_ transferase Chain: B: serine/threonine-protein kinase brsk2; structure of the n-terminal domain of sad
c4yy2A_ de novo protein Chain: A: dtor_3x33l; computationally designed left-handed alpha/alpha toroid with 3 repeats2 in space group p212121
c4xxkA_ transferase Chain: A: phycobiliprotein apce; crystal structure of the semet-derivative of the bilin-binding domain2 of phycobilisome core-membrane linker apce
c4xhfD_ oxidoreductase Chain: D: na-translocating nadh-quinone reductase subunit c nqrc; crystal structure of shewanella oneidensis nqrc
c5cwnA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr71
c3x2wS_ transferase/peptide Chain: S: substrate peptide; michaelis complex of camp-dependent protein kinase catalytic subunit
c5es2A_ structural genomics, unknown function Chain: A: uncharacterized protein lpg0634; the crystal structure of a functionally uncharacterized protein2 lpg0634 from legionella pneumophila subsp. pneumophila str.3 philadelphia 1
c5cwhA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr14
c5cwmA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr64
c3x2uS_ transferase/peptide Chain: S: substrate peptide; michaelis-like initial complex of camp-dependent protein kinase2 catalytic subunit.
c5f2hA_ unknown function Chain: A: uncharacterized protein; 2.75 angstrom resolution crystal structure of uncharacterized protein2 from bacillus cereus atcc 10987
c5fn2B_ hydrolase Chain: B: presenilin-1; cryo-em structure of gamma secretase in complex with a drug dapt
c5cwcA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr5
c5eyfA_ solute-binding protein Chain: A: glutamate abc superfamily atp binding cassette transporter, crystal structure of solute-binding protein from enterococcus faecium2 with bound glutamate
c5cwoA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr76
c5cl2A_ protein binding Chain: A: sporulation-control protein spo0m; crystal structure of spo0m, sporulation control protein, from bacillus2 subtilis.
c5cwlA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr54
c5cwdA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr7
c5evyX_ oxidoreductase Chain: X: salicylate hydroxylase; salicylate hydroxylase substrate complex
c5cwqA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr81
c2n8qA_ hydrolase inhibitor Chain: A: predicted protein; nmr solution structure of s114a mutant of a uv inducible protein from2 chlamydomonas reinhardtii
c5byoB_ de novo protein Chain: B: dtor_12x31l; computationally designed left-handed alpha/alpha toroid with 122 repeats
c4xjvA_ hydrolase Chain: A: s-acyl fatty acid synthase thioesterase, medium chain; crystal structure of human thioesterase 2
c5dfwH_ cell adhesion Chain: H: single chain fv fragment; crystal structure of human cd81 large extracellular loop in complex2 with single chain fv fragment k13
c5cwjA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr49
c5cwkA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr53
c2n3dA_ structural protein Chain: A: bactofilin a; atomic structure of the cytoskeletal bactofilin baca revealed by2 solid-state nmr
c2n6bA_ toxin Chain: A: hui1; nmr structure of the de-novo toxin hui1
c5e1jA_ metal transport Chain: A: two pore calcium channel protein 1; structure of voltage-gated two-pore channel tpc1 from arabidopsis2 thaliana
c5cwbA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr4
c5cwpA_ de novo protein Chain: A: designed helical repeat protein; crystal structure of de novo designed helical repeat protein dhr79
c4yxxA_ de novo protein Chain: A: dtor_6x35l; computationally designed left-handed alpha/alpha toroid with 6 repeats
c5d5hA_ isomerase Chain: A: dna topoisomerase 1; crystal structure of mycobacterium tuberculosis topoisomerase i


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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