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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Oct 03

Fold library idPDB HeaderMoleculeTitle
c5a9qY_ transport protein Chain: Y: nucleoporin seh1; human nuclear pore complex
c4zb6C_ transferase Chain: C: pcure2p4; crystal structure of glutathione transferase ure2p4 from phanerochaete2 chrysosporium in complex with oxidized glutathione.
c5c8eC_ transcription regulator/dna Chain: C: light-dependent transcriptional regulator carh; crystal structure of thermus thermophilus carh bound to2 adenosylcobalamin and a 26-bp dna segment
c4xhtD_ replication Chain: D: protein timeless homolog; crystal structure of timeless_pab domain native form
c5a9qZ_ transport protein Chain: Z: nuclear pore complex protein nup85; human nuclear pore complex
c4zemB_ translation Chain: B: translation initiation factor eif2b-like protein, crystal structure of eif2b beta from chaetomium thermophilum
c4uzsB_ hydrolase Chain: B: beta-galactosidase; crystal structure of bifidobacterium bifidum beta-2 galactosidase
c2n28A_ viral protein Chain: A: protein vpu; solid-state nmr structure of vpu
c5a9qK_ transport protein Chain: K: nucleoporin nup37; human nuclear pore complex
c5d17L_ dna binding protein Chain: L: transposon tn7 transposition protein tnse; structure of the c-terminal domain of tnse at 2.85 resolution
c5cxoA_ hydrolase Chain: A: epoxide hydrolase; intriguing role of epoxide hydrolase/cyclase-like enzyme salbiii in2 pyran ring formation in polyether salinomycin
c4rmoA_ toxin/rna Chain: A: cptn toxin; crystal structure of the cptin type iii toxin-antitoxin system from2 eubacterium rectale
c5c5tB_ oxidoreductase Chain: B: prolyl 4-hydroxylase; the crystal structure of viral collagen prolyl hydroxylase vcph from2 paramecium bursaria chlorella virus-1 - 2og complex
c5c7rA_ antifreeze protein Chain: A: fusion protein of maltose-binding periplasmic protein and revealing surface waters on an antifreeze protein by fusion protein2 crystallography
c4rziB_ oxidoreductase Chain: B: 3-ketoacyl-acyl carrier protein reductase; crystal structure of phab from synechocystis sp. pcc 6803
c4uyaA_ transferase Chain: A: mitogen-activated protein kinase kinase kinase mlk4; structure of mlk4 kinase domain with atpgammas
c4uxdC_ lyase Chain: C: 2-dehydro-3-deoxy-d-gluconate/2-dehydro-3-deoxy- 2-keto 3-deoxygluconate aldolase from picrophilus torridus
c5a9qD_ transport protein Chain: D: nuclear pore complex protein nup107; human nuclear pore complex
c4uy9A_ transferase Chain: A: mitogen-activated protein kinase kinase kinase 9; structure of mlk1 kinase domain with leucine zipper 1
c5do8A_ hydrolase Chain: A: lmo0184 protein; 1.8 angstrom crystal structure of listeria monocytogenes lmo01842 alpha-1,6-glucosidase
c4zbbD_ transferase Chain: D: pcure2p8; crystal structure of the glutathione transferase ure2p8 from2 phanerochaete chrysosporium complexed with glutathionyl-s-3 dinitrobenzene.
c5dldA_ isomerase Chain: A: udp-n-acetylglucosamine 2-epimerase; crystal structure of a udp-n-acetylglucosamine 2-epimerase from2 burkholderia vietnamiensis complexed with udp-glcnac and udp
c4pa5A_ transferase Chain: A: protein-glutamine gamma-glutamyltransferase; tgl - a bacterial spore coat transglutaminase - cystamine complex
c5bv9A_ hydrolase Chain: A: cellulose 1,4-beta-cellobiosidase; the structure of bacillus pumilus gh48 in complex with cellobiose
c5a9qS_ transport protein Chain: S: nuclear pore complex protein nup160; human nuclear pore complex
c5d1wD_ transcription Chain: D: rv3249c transcriptional regulator; crystal structure of mycobacterium tuberculosis rv3249c2 transcriptional regulator.
c4yg3A_ viral protein Chain: A: outer capsid protein vp4; structural basis of glycan recognition in neonate-specific rotaviruses
c4wmaA_ transferase/protein binding Chain: A: xyloside xylosyltransferase 1; crystal structure of mouse xyloside xylosyltransferase 1 complexed2 with manganese,acceptor ligand and udp-glucose
c5a9qB_ transport protein Chain: B: nuclear pore complex protein nup155; human nuclear pore complex
c5a9q5_ transport protein Chain: 5: nuclear pore complex protein nup96; human nuclear pore complex
c4wfwA_ structural protein Chain: A: general secretion pathway protein b; the crystal structure of dickeya dadantii gspb from the type 22 secretion system
c4zgoA_ cell cycle Chain: A: cell division cycle protein 123; structure of c-terminally truncated cdc123 from schizosaccharomyces2 pombe
c4v00B_ antimicrobial protein Chain: B: monotreme lactating protein; structural and functional characterization of a novel2 monotreme-specific protein from the milk of the platypus
c5dvtA_ transferase Chain: A: calmodulin-domain protein kinase 1; crystal structure of tgcdpk1 from toxoplasma gondii complexed with 5gb
c5daoA_ oxidoreductase Chain: A: laccase; laccase from antrodiella faginea
c5d1rA_ transcription Chain: A: rv1816 transcriptional regulator; crystal structure of mycobacterium tuberculosis rv1816 transcriptional2 regulator.
c5bviB_ transcription Chain: B: interferon regulatory factor 4; x-ray structure of interferon regulatory factor 4 iad domain
c5dkvD_ sugar binding protein Chain: D: abc transporter substrate binding protein (ribose); crystal structure of an abc transporter solute binding protein from2 agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d-3 tagatopyranose
c4zeoH_ translation Chain: H: translation initiation factor eif-2b-like protein; crystal structure of eif2b delta from chaetomium thermophilum
c4zgnA_ cell cycle Chain: A: cell division cycle protein 123; structure cdc123 complexed with the c-terminal domain of eif2gamma
c5cqfA_ oxidoreductase Chain: A: l-lysine 6-monooxygenase; crystal structure of l-lysine 6-monooxygenase from pseudomonas2 syringae
c5dt9A_ oxidoreductase Chain: A: erythronate-4-phosphate dehydrogenase; crystal structure of a putative d-erythronate-4-phosphate2 dehydrogenase from vibrio cholerae


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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