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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Jul 18

Fold library idPDB HeaderMoleculeTitle
c4xb1B_ oxidoreductase Chain: B: 319aa long hypothetical homoserine dehydrogenase; hyperthermophilic archaeal homoserine dehydrogenase in complex with2 nadph
c5c00B_ oxidoreductase Chain: B: mdba protein; mdba protein, a thiol-disulfide oxidoreductase from corynebacterium2 diphtheriae
c4xohB_ cell cycle Chain: B: division mal foutue 1 protein; mechanistic insights into anchorage of the contractile ring from yeast2 to humans
c5bo6B_ transferase Chain: B: sia-alpha-2,3-gal-beta-1,4-glcnac-r:alpha 2,8- structure of human sialyltransferase st8siaiii in complex with cdp
c5c8sD_ transferase Chain: D: guanine-n7 methyltransferase; crystal structure of the sars coronavirus nsp14-nsp10 complex with2 functional ligands sah and gpppa
c4rrcA_ ligase Chain: A: probable threonine--trna ligase 2; n-terminal editing domain of threonyl-trna synthetase from aeropyrum2 pernix with l-thr3aa (snapshot 3)
c4rtdA_ lipid binding protein Chain: A: uncharacterized lipoprotein yfhm; escherichia coli alpha-2-macroglobulin activated by porcine elastase
c4rfoN_ viral protein/immune system/inhibitor Chain: N: m48u1 cd4 mimetic peptide; crystal structure of the adcc-potent antibody n60-i3 fab in complex2 with hiv-1 clade a/e gp120 and m48u1
c3wzhA_ transcription Chain: A: uncharacterized protein af_1864; crystal structure of afcsx3
c4y9aB_ isomerase Chain: B: triosephosphate isomerase; crystal structure of triosephosphate isomerase from streptomyces2 coelicolor
c4z6jA_ biotin-binding protein Chain: A: avidin family; crystal structure of apo intact hoefavidin
c4s3oC_ ligase/transcription Chain: C: polycomb group ring finger protein 5; pcgf5-ring1b-ubch5c complex
c3wutA_ cell cycle Chain: A: centrosomal protein of 55 kda; structure basis of inactivating cell abscission
c4razB_ metal binding protein Chain: B: dna-binding transcriptional dual regulator of siderophore crystal structure of magnetospirillum gryphiswaldense msr-1 holo-fur
c4s21B_ signaling protein Chain: B: bacteriophytochrome (light-regulated signal transduction crystal structure of the photosensory core module of2 bacteriophytochrome rpa3015 from r. palustris
c4y90B_ isomerase Chain: B: triosephosphate isomerase; crystal structure of triosephosphate isomerase from deinococcus2 radiodurans
c4wp2D_ transport protein Chain: D: putative mrna export protein; chaetomium mex67 uba domain
c4yhbA_ oxidoreductase Chain: A: iron-chelator utilization protein; crystal structure of a siderophore utilization protein from t. fusca
c4zo3A_ hydrolase Chain: A: acylhomoserine lactonase; aidc, a dizinc quorum-quenching lactonase, in complex with a product2 n-hexnoyl-l-homoserine
c4w6vA_ transport protein Chain: A: di-/tripeptide transporter; crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
c4rrfD_ ligase Chain: D: threonine--trna ligase; editing domain of threonyl-trna synthetase from methanococcus2 jannaschii with l-ser3aa
c4y01B_ hydrolase Chain: B: peptidase s46; crystal structure of dipeptidyl peptidase 11 (dpp11) from2 porphyromonas gingivalis
c5bq2C_ transferase Chain: C: udp-n-acetylglucosamine 1-carboxyvinyltransferase; crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 (udp-n-acetylglucosamine enolpyruvyl transferase, ept) from3 pseudomonas aeruginosa
c4xoiB_ cell cycle Chain: B: actin-binding protein anillin; structure of hsanillin bound with rhoa(q63l) at 2.1 angstroms2 resolution
c4repA_ oxidoreductase, flavoprotein Chain: A: gamma-carotene desaturase; crystal structure of gamma-carotenoid desaturase
c4xm4C_ transport protein Chain: C: mex67; structure of chaetomium mex67:mtr2 subunits
c4qi4A_ oxidoreductase Chain: A: cellobiose dehydrogenase; dehydrogenase domain of myricoccum thermophilum cellobiose2 dehydrogenase, mtdh
c4qlzA_ hydrolase, metal binding protein Chain: A: sjchgc07024 protein; the structure of inorganic pyrophosphatase from schistosoma japonicum
c4ynsA_ isomerase Chain: A: lara protein; a tethered niacin-derived pincer complex with a nickel-carbon bond in2 lactate racemase
c4y8fA_ isomerase Chain: A: triosephosphate isomerase; crystal structure of triosephosphate isomerase from clostridium2 perfringens
c4txjD_ transferase Chain: D: uridine phosphorylase; crystal structure of uridine phosphorylase from schistosoma mansoni in2 complex with thymidine
c5br9C_ unknown function Chain: C: uncharacterized protein; crystal structure of an uncharacterized protein with similarity to2 peptidase yeaz from pseudomonas aeruginosa
c4r70B_ signaling protein Chain: B: bacteriophytochrome (light-regulated signal transduction crystal structure of bacteriophytochrome rpbphp3 from photosynthetic2 bacterium r. palustris
c4d70A_ hydrolase Chain: A: sortase family protein; structural, biophysical and biochemical analyses of a2 clostridium perfringens sortase d5 transpeptidase
c4xoiD_ cell cycle Chain: D: actin-binding protein anillin; structure of hsanillin bound with rhoa(q63l) at 2.1 angstroms2 resolution
c4zl4B_ hydrolase/hydrolase inhibitor Chain: B: aspartic protease pm5; plasmepsin v from plasmodium vivax bound to a transition state mimetic2 (wehi-842)
c4qpkA_ signaling protein Chain: A: phosphotransferase; 1.7 angstrom structure of a bacterial phosphotransferase
c2mvoA_ lipid binding protein Chain: A: putative lipoprotein; solution structure of the lantibiotic self-resistance lipoprotein mlbq2 from microbispora atcc pta-5024
c4y96B_ isomerase Chain: B: triosephosphate isomerase; crystal structure of triosephosphate isomerase from gemmata2 obscuriglobus
c4qi3A_ oxidoreductase Chain: A: cellobiose dehydrogenase; cytochome domain of myricoccum thermophilum cellobiose dehydrogenase,2 mtcyt
c4rfnM_ viral protein/immune system Chain: M: t-cell surface glycoprotein cd4 mimetic m48; crystal structure of adcc-potent rhesus macaque antibody jr4 in2 complex with hiv-1 clade a/e gp120 and m48
c4zqaA_ transcription repressor Chain: A: sin3 histone deacetylase corepressor complex component crystal structure of the sds3 dimerization domain
c4zbjD_ structural protein Chain: D: ubinuclein-1; ubn1 peptide bound to h3.3/h4/asf1
c5c6uA_ transferase Chain: A: aminotransferase; rv3722c aminotransferase from mycobacterium tuberculosis
c4qi6A_ oxidoreductase Chain: A: cellobiose dehydrogenase; cellobiose dehydrogenase from myricoccum thermophilum, mtcdh
c4qi7A_ oxidoreductase Chain: A: cellobiose dehydrogenase; cellobiose dehydrogenase from neurospora crassa, nccdh
c2n2hA_ transcription, protein binding Chain: A: sin3 histone deacetylase corepressor complex component solution structure of sds3 in complex with sin3a
c4wpmA_ transport protein Chain: A: mrna export protein; structure of the chaetomium thermophilum mex67:mtr2 complex
c4w6qC_ transferase Chain: C: glucosyltransferase; glycosyltransferase c from streptococcus agalactiae
c2n2hB_ transcription, protein binding Chain: B: paired amphipathic helix protein sin3a; solution structure of sds3 in complex with sin3a
c4qpjC_ signaling protein/dna binding protein Chain: C: cell cycle response regulator ctra; 2.7 angstrom structure of a phosphotransferase in complex with a2 receiver domain
c5a2qw_ ribosome Chain: W: ribosomal protein us8; structure of the hcv ires bound to the human ribosome
c4y7iB_ hydrolase Chain: B: myotubularin-related protein 8; crystal structure of mtmr8
c4zaiA_ cytokine Chain: A: c-x-c motif chemokine 13; crystal structure of cxcl13
c5a0oS_ de novo protein Chain: S: adhiron; adhiron raised against p300
c5a2qh_ ribosome Chain: H: ribosomal protein es7; structure of the hcv ires bound to the human ribosome
c5a3gA_ viral protein Chain: A: m50; structure of herpesvirus nuclear egress complex subunit m50
c4rfnD_ viral protein/immune system Chain: D: t-cell surface glycoprotein cd4 mimetic m48; crystal structure of adcc-potent rhesus macaque antibody jr4 in2 complex with hiv-1 clade a/e gp120 and m48


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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