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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Jun 13

Fold library idPDB HeaderMoleculeTitle
c5braA_ solute-binding protein Chain: A: putative periplasmic binding protein with substrate ribose; crystal structure of a putative periplasmic solute binding protein2 (ipr025997) from ochrobactrum anthropi atcc49188 (oant_2843, target3 efi-511085)
c4qkoA_ antimicrobial protein Chain: A: pyocin-s2 immunity protein; the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
c4ynhA_ structural protein Chain: A: spindle assembly abnormal protein 5; structure of the c. elegans sas-5 implico dimerization domain
c4u8uW_ oxygen storage/transport Chain: W: globin d chain; the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
c4u8uc_ oxygen storage/transport Chain: C: globin c chain; the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
c4yvqC_ oxidoreductase/fluorescent protein Chain: C: protein fluorescent in blue light, chloroplastic; the non-canonical tetratricopeptide-repeat (tpr) domain of fluorescent2 (flu) mediates complex formation with glutamyl-trna reductase
c2n2jA_ viral protein Chain: A: epstein-barr nuclear antigen 2; solution structure of the ebna-2 n-terminal dimerization (end) domain2 from the epstein-barr virus
c4qvfB_ apoptosis Chain: B: peptide from bcl-2-like protein 11; crystal structure of bcl-xl in complex with bim bh3 domain
c4qxzA_ unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein from staphylococcus aureus
c3wz4F_ unknown function Chain: F: doti; structure of the periplasmic domain of doti (crystal form i)
c4xd9A_ translation Chain: A: ribosome biogenesis protein, putative (afu_orthologue structure of rpf2-rrs1 complex involved in ribosome biogenesis
c5bovD_ hydrolase Chain: D: putative epoxide hydrolase protein; crystal structure of a putative epoxide hydrolase (kpn_01808) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.60 a3 resolution
c3wy3A_ hydrolase Chain: A: alpha-glucosidase; crystal structure of alpha-glucosidase mutant d202n in complex with2 glucose and glycerol
c4ydzA_ chaperone Chain: A: stress-induced protein 1; stress-induced protein 1 from caenorhabditis elegans
c4yifE_ dna binding protein Chain: E: uncharacterized hth-type transcriptional regulator rv0880; crystal structure of rv0880
c4ph2A_ viral protein Chain: A: blv capsid - n-terminal domain; mature n-terminal domain of capsid protein from bovine leukemia virus
c4yv4D_ structural protein Chain: D: spindle assembly abnormal protein 5; structure of the c. elegans sas-5 coiled coil domain
c4py3B_ protein binding Chain: B: bartonella effector protein (bep) substrate of virb t4ss; crystal structure of the n-terminal fic domain of bep8 protein (virb-2 translocated bartonella effector protein) from bartonella sp. 1-1c
c4zlgA_ transferase Chain: A: putative b-glycan phosphorylase; cellobionic acid phosphorylase - gluconic acid complex
c4u8us_ oxygen storage/transport Chain: S: globin d chain; the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
c4xk88_ photosynthesis Chain: 8: chlorophyll a-b binding protein 3, chloroplastic; PDB Fragment:unp residues 2-81;
c5bmoB_ hydrolase Chain: B: putative uncharacterized protein lnmx; lnmx protein, a putative glcnac-pi de-n-acetylase from streptomyces2 atroolivaceus
c4xaeB_ oxidoreductase Chain: B: feruloyl coa ortho-hydroxylase 1; structure of feruloyl-coa 6-hydroxylase (f6h) from arabidopsis2 thaliana
c4u8uM_ oxygen storage/transport Chain: M: linker l1; the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
c4ro1B_ hydrolase Chain: B: dis3-like exonuclease 2; an 3'-5'-exoribonuclease that specifically recognizes rnas.
c3wz3A_ unknown function Chain: A: tram protein; structure of a periplasmic fragment of tram
c4xcoC_ rna binding protein Chain: C: signal recognition particle 54 kda protein,signal sequence; signal-sequence induced conformational changes in the signal2 recognition particle
c4uurB_ oxidoreductase Chain: B: putative hemoglobin-like oxygen-binding protein; cold-adapted truncated hemoglobin from the antarctic marine2 bacterium pseudoalteromonas haloplanktis tac125
c4ph0B_ viral protein Chain: B: blv capsid; capsid protein from bovine leukemia virus
c4rzlA_ dna binding protein Chain: A: restriction endonuclease lpnpi; dna recognition domain of the cytosine modification-dependent2 restriction endonuclease lpnpi
c4qk0C_ hydrolase Chain: C: gh127 beta-l-arabinofuranoside; crystal structure of ara127n-se, a gh127 beta-l-arabinofuranosidase2 from geobacillus stearothermophilus t6
c4pxjB_ protein binding Chain: B: c-jun-amino-terminal kinase-interacting protein 3; crystallographic structure of the lzii fragment (anti-parallel2 orientation) from jip3
c4ud8B_ oxidoreductase Chain: B: fad-binding and bbe domain-containing protein; atbbe15
c5bp8A_ isomerase Chain: A: ent-copalyl diphosphate synthase; ent-copalyl diphosphate synthase from streptomyces platensis
c4qkoH_ antimicrobial protein Chain: H: pyocin-s2; the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
c4unmB_ metal binding protein Chain: B: secreted protein; structure of galactose oxidase homologue from streptomyces lividans
c4xk8i_ photosynthesis Chain: I: photosystem i reaction center subunit viii; crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
c4wnkA_ ligase Chain: A: g protein-coupled receptor kinase 5; crystal structure of bovine g protein coupled-receptor kinase 5 in2 complex with ccg215022
c5bp9A_ transferase Chain: A: putative methyltransferase protein; crystal structure of sam-dependent methyltransferase from bacteroides2 fragilis in complex with s-adenosyl-l-homocysteine
c5bq9B_ unknown function, structural genomics Chain: B: uncharacterized protein; crystal structure of uncharacterized protein lpg1496 legionella2 pneumophila subsp. pneumophila
c5bmtB_ unknown function Chain: B: uncharacterized protein; crystal structure of an uncharacterized protein (parmer_03598) from2 parabacteroides merdae atcc 43184 at 1.50 a resolution
c4d0jD_ hydrolase Chain: D: beta-glucosidase; crystal structure of glycoside hydrolase family 3 beta-2 glucosidase cel3a from the moderately thermophilic fungus3 rasamsonia emersonii
c4xd9D_ translation Chain: D: ribosome biogenesis protein (rrs1), putative structure of rpf2-rrs1 complex involved in ribosome biogenesis
c4uisA_ hydrolase Chain: A: gamma-secretase; the cryoem structure of human gamma-secretase complex
c4uobA_ lyase Chain: A: endonuclease iii-3; crystal structure of deinococcus radiodurans endonuclease iii-3
c2mp1A_ signaling protein Chain: A: c-c motif chemokine 19; solution structure of the human chemokine ccl19
c4y21A_ exocytosis Chain: A: protein unc-13 homolog a; crystal structure of munc13-1 mun domain
c4tsdB_ unknown function Chain: B: hp1029; crystal structure of helicobacter pylori hp1029
c2mu4A_ membrane protein Chain: A: flpp3sol_2; structure of f. tularensis virulence determinant
c4uhhA_ hydrolase Chain: A: esterase; structural studies of a thermophilic esterase from2 thermogutta terrifontis (cacodylate complex)
c4unfA_ lyase Chain: A: endonuclease iii-1; crystal structure of deinococcus radiodurans endonuclease iii-1
c4p7pA_ transferase Chain: A: phthiocerol synthesis polyketide synthase type i ppsc; structure of the dehydratase domain of ppsc from mycobacterium2 tuberculosis in complex with crotonyl-coenzyme a
c4uisB_ hydrolase Chain: B: gamma-secretase; the cryoem structure of human gamma-secretase complex
c4xk8I_ photosynthesis Chain: I: photosystem i reaction center subunit viii; crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
c2mxaA_ membrane protein Chain: A: ndh-1 complex sensory subunit cups; solution structure of the ndh-1 complex subunit cups from2 thermosynechococcus elongatus
c3wvtA_ protein binding Chain: A: elr1; structural and biochemical study of equine lentivirus receptor 1
c4xd9C_ translation Chain: C: ribosome biogenesis protein, putative (afu_orthologue structure of rpf2-rrs1 complex involved in ribosome biogenesis


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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