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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Apr 11

Fold library idPDB HeaderMoleculeTitle
c4r1iB_ membrane protein Chain: B: aminobenzoyl-glutamate transporter; structure and function of neisseria gonorrhoeae mtrf illuminates a2 class of antimetabolite efflux pumps
c3j9pD_ transport protein Chain: D: maltose-binding periplasmic protein, transient receptor structure of the trpa1 ion channel determined by electron cryo-2 microscopy
c4ypiG_ rna binding protein Chain: G: polymerase cofactor vp35; structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
c3x0vA_ oxidoreductase Chain: A: l-lysine oxidase; structure of l-lysine oxidase
c4ulvB_ electron transport Chain: B: cytochrome c, class ii; cytochrome c prime from shewanella frigidimarina
c4yv9C_ dna binding protein/inhibitor Chain: C: transcriptional regulator; x-ray crystal structure of streptococcus dysgalactiae shp pheromone2 receptor rgg2
c4yliA_ sugar binding protein Chain: A: collectin-11; cl-k1 trimer
c4runB_ transport protein Chain: B: odorant-binding protein 2a; crystal structure of human odorant binding protein obpiia
c4tlwA_ toxin, transferase Chain: A: adp-ribosylating toxin cards; cards toxin, full-length
c4yhhV_ ribosome Chain: V: 30s ribosomal protein thx; crystal structure of the 30s ribosomal subunit from thermus2 thermophilus in complex with tigecycline
c4cvdA_ hydrolase Chain: A: lysozyme; crystal structure of the central repeat of cell wall2 binding module of cpl7
c4mxeA_ transferase Chain: A: n-acetyltransferase esco1; human establishment factor-like protein 1
c4u7mA_ signaling protein Chain: A: leucine-rich repeats and immunoglobulin-like domains lrig1 extracellular domain: structure and function analysis
c4ypiA_ rna binding protein Chain: A: nucleoprotein; structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
c3wucB_ sugar binding protein Chain: B: galectin; x-ray crystal structure of xenopus laevis galectin-va
c4rt0B_ protein binding Chain: B: alginate biosynthesis protein alg44; structure of the alg44 pilz domain from pseudomonas aeruginosa pao1 in2 complex with c-di-gmp
c4rf9A_ transferase Chain: A: arginine kinase; crystal structure of double-domain arginine kinase from anthopleura2 japonicas in complex with l-arginine and atpgs
c4ypiF_ rna binding protein Chain: F: polymerase cofactor vp35; structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
c4r9pA_ transcription Chain: A: re28239p; an expansion to the smad mh2-family: the structure of the n-mh22 expanded domain
c3wt9A_ proton transport Chain: A: rhodopsin i; crystal structure of the cell-free synthesized membrane protein,2 acetabularia rhodopsin i, at 1.48 angstrom
c4rusD_ sugar binding protein Chain: D: fish-egg lectin; carp fishelectin, holo form
c2mg4B_ de novo protein Chain: B: computational designed homodimer; computational design and experimental verification of a symmetric2 protein homodimer
c4yweE_ oxidoreductase Chain: E: putative aldehyde dehydrogenase; crystal structure of a putative aldehyde dehydrogenase from2 burkholderia cenocepacia
c3wudA_ sugar binding protein Chain: A: galectin; x-ray crystal structure of xenopus laevis galectin-ib
c4ytdB_ transport protein Chain: B: protein bicaudal d homolog 1; crystal structure of the c-terminal coiled coil of mouse bicaudal d1
c4yyfC_ hydrolase Chain: C: beta-n-acetylhexosaminidase; the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
c4s1zI_ hydrolase Chain: I: ubiquitin thioesterase zranb1; crystal structure of trabid nzf1 in complex with k29 linked di-2 ubiquitin
c4s28A_ lyase Chain: A: phosphomethylpyrimidine synthase, chloroplastic; crystal structure of arabidopsis thaliana thic with bound2 aminoimidazole ribonucleotide, s-adenosylhomocysteine, fe4s4 cluster3 and fe
c4s1zF_ hydrolase Chain: F: ubiquitin thioesterase zranb1; crystal structure of trabid nzf1 in complex with k29 linked di-2 ubiquitin
c4yiiA_ ligase/cell cycle Chain: A: anaphase-promoting complex subunit 2; structure of an apc2-ubch10 complex reveals distinctive cullin-ring2 ligase mechanism for anaphase-promoting complex/cyclosome
c4yn2A_ viral protein Chain: A: fusolin; the atomic structure of wiseana spp entomopoxvirus (wsepv) fusolin2 spindles
c4s2aA_ lyase Chain: A: phosphomethylpyrimidine synthase; crystal structure of caulobacter crescentus thic with fe4s4 cluster at2 remote site (holo form)
c2mh8A_ protein binding Chain: A: ga-79-mbp, maltose binding protein; ga-79-mbp cs-rosetta structures
c4uxmA_ structural protein Chain: A: struthiocalcin-1; crystal structure of struthiocalcin-1, a different crystal form.
c4s1zJ_ hydrolase Chain: J: ubiquitin thioesterase zranb1; crystal structure of trabid nzf1 in complex with k29 linked di-2 ubiquitin
c4s1zG_ hydrolase Chain: G: ubiquitin thioesterase zranb1; crystal structure of trabid nzf1 in complex with k29 linked di-2 ubiquitin
c4s1zH_ hydrolase Chain: H: ubiquitin thioesterase zranb1; crystal structure of trabid nzf1 in complex with k29 linked di-2 ubiquitin
c4yycA_ transferase Chain: A: putative trimethylamine methyltransferase; crystal structure of trimethylamine methyltransferase from2 sinorhizobium meliloti in complex with unknown ligand
c4ys6A_ solute-binding protein Chain: A: putative solute-binding component of abc transporter; crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentans (cphy_1585, target efi-3 511156) with bound beta-d-glucose
c4u7lA_ signaling protein Chain: A: leucine-rich repeats and immunoglobulin-like domains lrig1 extracellular domain: structure and function analysis


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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