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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Feb 07

Fold library idPDB HeaderMoleculeTitle
c4r2lB_ unknown function Chain: B: universal stress protein f; crystal structure of ynaf (universal stress protein f) from salmonella2 typhimurium
c4rkmK_ unknown function Chain: K: mcca; wolinella succinogenes octaheme sulfite reductase mcca, form i
c4n2gA_ hydrolase Chain: A: protein-arginine deiminase type-2; crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
c4wwuE_ transport protein Chain: E: mrna export factor mex67; structure of mex67:mtr2
c4lwsA_ unknown function Chain: A: uncharacterized protein; secreted protein
c4wwuD_ transport protein Chain: D: mrna export factor mex67; structure of mex67:mtr2
c2mroB_ transport protein/signaling protein Chain: B: dna damage-inducible protein 1; structure of the complex of ubiquitin and the uba domain from dna-2 damage-inducible 1 protein (ddi1)
c4wxfC_ transferase Chain: C: serine hydroxymethyltransferase; crystal structure of l-serine hydroxymethyltransferase in complex with2 glycine
c4p96B_ transcription Chain: B: fatty acid metabolism regulator protein; fadr, fatty acid responsive transcription factor from vibrio cholerae
c4ounA_ hydrolase Chain: A: mini-ribonuclease 3; crystal structure of mini-ribonuclease 3 from bacillus subtilis
c4r2jA_ metal binding protein, unknown function Chain: A: universal stress protein e; crystal structure of ydaa (universal stress protein e) from salmonella2 typhimurium
c4wcxC_ lyase Chain: C: biotin and thiamin synthesis associated; crystal structure of hydg: a maturase of the [fefe]-hydrogenase
c4xcwF_ transferase Chain: F: molybdopterin adenylyltransferase; crystal structure of molybdenum cofactor biosynthesis protein moga2 from helicobacter pylori str. j99
c4xasB_ signaling protein Chain: B: metabotropic glutamate receptor 2; mglur2 ecd ligand complex
c4wwsE_ oxidoreductase Chain: E: putative heme-dependent peroxidase lmo2113; structure of chlorite dismutase-like protein from listeria2 monocytogenes
c4tx3B_ oxidoreductase Chain: B: peptide synthetase, module 7; complex of the x-domain and oxyb from teicoplanin biosynthesis
c4n2kA_ hydrolase Chain: A: protein-arginine deiminase type-2; crystal structure of protein arginine deiminase 2 (q350a, 0 mm ca2+)
c4wenB_ structural protein Chain: B: anti-f4+etec bacteria vhh variable region; co-complex structure of the f4 fimbrial adhesin faeg variant ac with2 llama single domain antibody v2
c4ojyA_ hydrolase Chain: A: beta-galactosidase; 3d structure of the e323a catalytic mutant of gan42b, a gh42 beta-2 galactosidase from g. stearothermophilus
c4v1oM_ transcription Chain: M: transcription initiation factor iib; architecture of the rna polymerase ii-mediator core2 transcription initiation complex
c4uc2B_ membrane protein Chain: B: tspo; crystal structure of translocator protein 18kda (tspo) from2 rhodobacter sphaeroides (a139t mutant) in p212121 space group
c4wykC_ transport protein Chain: C: nuclear rna export factor 1; structure of the lrr and ntf2-like domains of nxf1 complexed with nxt1
c2mtwA_ protein binding Chain: A: erythrocyte-binding antigen 175; evidence supporting the hypothesis that specifically modifying a2 malaria peptide to fit into hla-dr 1*03 molecules induces antibody3 production and protection
c2mrnB_ dna binding protein Chain: B: antitoxin maze; structure of truncated ecmaze
c2mv1A_ signaling protein Chain: A: relaxin a chain; solution nmr structure of human relaxin-2
c4xe4A_ blood clotting Chain: A: coagulation factor xii; coagulation factor xii protease domain crystal structure
c4lu2A_ odorant-binding protein Chain: A: 10.7 kda salivary protein; structure of ljm19
c4v1oQ_ transcription Chain: Q: transcription initiation factor iif subunit alpha; architecture of the rna polymerase ii-mediator core2 transcription initiation complex
c4xk1A_ transferase Chain: A: phosphoserine aminotransferase; crystal structure of a phosphoserine/phosphohydroxythreonine2 aminotransferase (psat) from pseudomonas aeruginosa with cofactor3 pyridoxal phosphate and bound glutamate
c4v14A_ hydrolase Chain: A: mutator mutt protein; structure and function analysis of mutt from the2 psychrofile fish pathogen aliivibrio salmonicida and the3 mesophile vibrio cholerae
c4cvhA_ transferase Chain: A: isoprenoid synthase domain-containing protein; crystal structure of human isoprenoid synthase domain-2 containing protein
c2rupA_ transport protein Chain: A: p2x purinoceptor 4; solution structure of rat p2x4 receptor head domain
c4lyaA_ cell cycle Chain: A: uncharacterized protein; geobacillus protein
c3wszA_ protein binding Chain: A: sortilin-related receptor; sorla vps10p domain in complex with abeta-derived peptide
c3wsxA_ protein binding Chain: A: sortilin-related receptor; sorla vps10p domain in ligand-free form
c4rku4_ photosynthesis Chain: 4: chlorophyll a-b binding protein p4, chloroplastic; crystal structure of plant photosystem i at 3 angstrom resolution
c4cjxA_ oxidoreductase Chain: A: c-1-tetrahydrofolate synthase, cytoplasmic, putative; the crystal structure of trypanosoma brucei n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)3 complexed with nadp cofactor and inhibitor
c2mvnA_ translation Chain: A: elongation factor 1-delta; solution structure of eef1bdelta car domain in tctp-bound state
c4uaeA_ protein transport Chain: A: importin subunit alpha-3; importin alpha 3 delta ibb in complex with influenza pb2 nuclear2 localization domain
c3j9aA_ viral protein Chain: A: capsid protein vp26 homolog; backbone model of the smallest capsid protein (scp) of kaposi's2 sarcoma-associated herpesvirus (kshv)
c4v1nR_ transcription Chain: R: transcription initiation factor iif subunit beta; architecture of the rna polymerase ii-mediator core2 transcription initiation complex
c4v1oS_ transcription Chain: S: mediator of rna polymerase ii transcription subunit 6; architecture of the rna polymerase ii-mediator core2 transcription initiation complex
c2mvmA_ translation Chain: A: elongation factor 1-delta; solution structure of eef1bdelta car domain
c2mtxA_ protein binding Chain: A: apical membrane antigen-1; protection against experimental p. falciparum malaria is associated2 with short ama-1 peptide analogue alpha-helical structures
c4rm4A_ electron transport Chain: A: cytochrome p450; the crystal structure of the versatile cytochrome p450 enzyme cyp109b12 from bacillus subtilis
c4lwsB_ unknown function Chain: B: uncharacterized protein; secreted protein
c4rkuI_ photosynthesis Chain: I: photosystem i reaction center subunit viii; crystal structure of plant photosystem i at 3 angstrom resolution
c4v1oW_ transcription Chain: W: mediator of rna polymerase ii transcription subunit 11; architecture of the rna polymerase ii-mediator core2 transcription initiation complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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