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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Dec 06

Fold library idPDB HeaderMoleculeTitle
c4nx0G_ hydrolase Chain: G: abp, a gh27 beta-l-arabinopyranosidase; crystal structure of abp-wt, a gh27-b-l-arabinopyranosidase from2 geobacillus stearothermophilus
c4ribA_ hydrolase/dna Chain: A: fanconi-associated nuclease 1; fan1 nuclease bound to 5' phosphorylated p(dt) single flap dna
c4r84B_ transferase Chain: B: sialyltransferase 0160; crystal structure of sialyltransferase from photobacterium damsela2 with cmp-3f(a)neu5ac bound
c2mvfA_ ribosomal protein Chain: A: uncharacterized protein; structural insight into an essential assembly factor network on the2 pre-ribosome
c3wzsA_ transferase Chain: A: udp-glucose-glycoprotein glucosyltransferase-like protein; crystal structure of trx3 domain of uggt (detergent-bound form)
c4wczB_ isomerase Chain: B: enoyl-coa hydratase/isomerase; crystal structure of a putative enoyl-coa hydratase/isomerase from2 novosphingobium aromaticivorans
c4usiC_ signaling protein Chain: C: nitrogen regulatory protein pii; nitrogen regulatory protein pii from chlamydomonas2 reinhardtii in complex with mgatp and 2-oxoglutarate
c4p6vA_ oxidoreductase Chain: A: na(+)-translocating nadh-quinone reductase subunit a; crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
c4u9uB_ oxidoreductase Chain: B: na(+)-translocating nadh-quinone reductase subunit f; crystal structure of nqrf fad-binding domain from vibrio cholerae
c2mwfA_ transcription Chain: A: transcription elongation regulator 1; nmr structure of fbp28 ww2 mutant y438r dn
c4x0oG_ transferase Chain: G: 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2; beta-ketoacyl-(acyl carrier protein) synthase iii-2 (fabh2) from2 vibrio cholerae soaked with acetyl-coa
c4ux3A_ protein binding Chain: A: structural maintenance of chromosomes protein 3; cohesin smc3-hd:scc1-n complex from yeast
c4ro3A_ structural genomics, unknown function Chain: A: hypothetical protein; 1.8 angstrom crystal structure of the n-terminal domain of protein2 with unknown function from vibrio cholerae.
c4ub8Y_ electron transport, photosynthesis Chain: Y: photosystem ii reaction center protein ycf12; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c4p6vE_ oxidoreductase Chain: E: na(+)-translocating nadh-quinone reductase subunit e; crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
c4cpgA_ chaperone Chain: A: small glutamine-rich tetratricopeptide repeat-containing solution structure of the sgta n-terminal domain
c4pj6B_ hydrolase Chain: B: leucyl-cystinyl aminopeptidase; crystal structure of human insulin regulated aminopeptidase with2 lysine in active site
c4ojvA_ hydrolase Chain: A: 3',5'-cyclic-nucleotide phosphodiesterase 1; crystal structure of unliganded yeast pde1
c4rdbA_ structural genomics, unknown function Chain: A: immunoreactive 32 kda antigen pg49; crystal structure of an immunoreactive 32 kda antigen pg49 (pg_0181)2 from porphyromonas gingivalis w83 at 1.45 a resolution (psi community3 target, nakayama)
c4r29D_ transferase Chain: D: uncharacterized protein; crystal structure of bacterial cysteine methyltransferase effector2 nlee
c4r39A_ transferase Chain: A: blue-light-activated histidine kinase 2; histidine kinase domain from erythrobacter litoralis el346 blue-light2 activated histidine kinase
c3wnvA_ oxidoreductase Chain: A: glyoxylate reductase; crystal structure of a glyoxylate reductase from paecilomyes2 thermophila
c4d2iB_ hydrolase Chain: B: hera; crystal structure of the hera hexameric dna translocase2 from sulfolobus solfataricus bound to amp-pnp
c4r3aA_ signaling protein Chain: A: blue-light-activated histidine kinase 2; erythrobacter litoralis el346 blue-light activated histidine kinase
c4ux3B_ protein binding Chain: B: mitotic chromosome determinant-related protein; cohesin smc3-hd:scc1-n complex from yeast
c4rs6A_ transferase Chain: A: serine/threonine-protein kinase plk2; crystal structure of the c domain of polo like kinase ii in homo2 sapiens
c4oxpA_ hydrolase Chain: A: ribonuclease e; x-ray crystal structure of the s1 and 5'-sensor domains of rnase e2 from caulobacter crescentus
c4ussA_ transferase Chain: A: glutathionyl hydroquinone reductase; populus trichocarpa glutathione transferase x1-1 (ghr1),2 complexed with glutathione
c4qvzB_ translation Chain: B: fragile x mental retardation protein 1; fmrp n-terminal domain
c2mtnA_ transferase/protein binding Chain: A: histone-lysine n-methyltransferase 2a, pc4 and sfrs1- solution structure of mll-ibd complex
c4ub8L_ electron transport, photosynthesis Chain: L: photosystem ii reaction center protein l; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c4rt5A_ oxidoreductase Chain: A: glyoxalase/bleomycin resistance protein/dioxygenase; the crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase protein from planctomyces limnophilus dsm 3776
c4rgwB_ transferase/transcription Chain: B: transcription initiation factor tfiid subunit 7; crystal structure of a taf1-taf7 complex in human transcription factor2 iid
c4n9nA_ transcription Chain: A: sterol uptake control protein 2, lysozyme; crystal structure of saccharomyces cerevisiae upc2 transcription2 factor fused with t4 lysozyme
c4p6vC_ oxidoreductase Chain: C: na(+)-translocating nadh-quinone reductase subunit c; crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
c3wmvA_ sugar binding protein Chain: A: lectin; the structure of an anti-cancer lectin mytilec with ligand from the2 mussel mytilus galloprovincialis
c4ub6T_ electron transport, photosynthesis Chain: T: photosystem ii reaction center protein t; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c4ub8t_ electron transport, photosynthesis Chain: T: photosystem ii reaction center protein t; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c2mwdA_ transcription Chain: A: transcription elongation regulator 1; nmr structure of fbp28 ww2 mutant y438r dndc
c4ub8T_ electron transport, photosynthesis Chain: T: photosystem ii reaction center protein t; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c4x00D_ hydrolase Chain: D: putative hydrolase; x-ray crystal structure of a putative aryl esterase from burkholderia2 cenocepacia
c4w8pB_ peptide binding protein Chain: B: amyloid beta a4 precursor protein-binding family b member crystal structure of riam tbs1 in complex with talin r7r8 domains
c4ub6y_ electron transport, photosynthesis Chain: Y: photosystem ii reaction center protein ycf12; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c4p6vF_ oxidoreductase Chain: F: na(+)-translocating nadh-quinone reductase subunit f; crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
c4rgwA_ transferase/transcription Chain: A: transcription initiation factor tfiid subunit 1; crystal structure of a taf1-taf7 complex in human transcription factor2 iid
c4ua8A_ transport protein Chain: A: carbohydrate abc transporter substrate-binding protein, eur_01830 (maltotriose-binding protein) complexed with maltotriose
c4p6vB_ oxidoreductase Chain: B: na(+)-translocating nadh-quinone reductase subunit b; crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
c4ub6L_ electron transport, photosynthesis Chain: L: photosystem ii reaction center protein l; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c4ub6l_ electron transport, photosynthesis Chain: L: photosystem ii reaction center protein l; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c2mixA_ toxin Chain: A: venom peptide toxin; structure of a novel venom peptide toxin from sample limited terebrid2 marine snail
c4ub6R_ electron transport, photosynthesis Chain: R: photosystem ii protein y; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c4p6vD_ oxidoreductase Chain: D: na(+)-translocating nadh-quinone reductase subunit d; crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
c2mweA_ transcription Chain: A: transcription elongation regulator 1; nmr structure of fbp28 ww2 mutant y438r, l453a dndc
c4pqzA_ transcription Chain: A: transcriptional protein swt1; crystal structure of swt1 c-terminal domain from yeast
c4ub6Y_ electron transport, photosynthesis Chain: Y: photosystem ii reaction center protein ycf12; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c4ub8y_ electron transport, photosynthesis Chain: Y: photosystem ii reaction center protein ycf12; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c2murA_ protein binding Chain: A: fanconi anemia-associated protein of 20 kda; solution structure of the human faap20 ubz-ubiquitin complex
c2muqA_ ubiquitin binding protein Chain: A: fanconi anemia-associated protein of 20 kda; solution structure of the human faap20 ubz
c4ub6t_ electron transport, photosynthesis Chain: T: photosystem ii reaction center protein t; native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
c4rleA_ unknown function Chain: A: uncharacterized protein yaaq; crystal structure of the c-di-amp binding pii-like protein dara
c4ub8R_ electron transport, photosynthesis Chain: R: photosystem ii protein y; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c4ub8l_ electron transport, photosynthesis Chain: L: photosystem ii reaction center protein l; native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
c4r8gE_ protein binding/calcium-binding protein Chain: E: unconventional myosin-ic; crystal structure of myosin-1c tail in complex with calmodulin


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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