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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Nov 08

Fold library idPDB HeaderMoleculeTitle
c4w8iB_ lyase Chain: B: probable sphingosine-1-phosphate lyase; crystal structure of lpspl/lpp2128, legionella pneumophila2 sphingosine-1 phosphate lyase
c4p9lA_ transport protein Chain: A: ryanodine receptor 2; crystal structure of mouse ryanodine receptor 2 spry2 domain (1080-2 1253) disease mutant a1107m
c4ndlC_ de novo protein Chain: C: enh-c2b, computational designed homodimer; computational design and experimental verification of a symmetric2 homodimer
c4mtdA_ dna binding protein/dna Chain: A: zinc uptake regulation protein; zinc uptake regulator complexed with zinc and dna
c4oe8C_ immune system Chain: C: alphabody mb23; cytokine complex crystal form 1
c4v2dA_ signaling protein Chain: A: fibronectin leucine rich transmembrane protein 2; flrt2 lrr domain
c4pprA_ hydrolase Chain: A: penicillin-binding protein dacb1; crystal structure of mycobacterium tuberculosis d,d-peptidase rv33302 in complex with meropenem
c4ncpF_ unknown function Chain: F: uncharacterized protein; crystal structure of 4-hbt like thioesterase sav1878 from2 staphylococcus aureus subsp. aureus mu50
c4tmpA_ transcription Chain: A: protein af-9; crystal structure of af9 yeats bound to h3k9ac peptide
c4uzzA_ motor protein Chain: A: intraflagellar transport complex b protein 46 crystal structure of the ttift52-46 complex
c4v2eA_ signaling protein Chain: A: fibronectin leucine rich transmembrane protein 3; flrt3 lrr domain
c4uotA_ de novo protein Chain: A: designed helical bundle 5h2l; thermodynamic hyperstability in parametrically designed2 helical bundles
c4ubsA_ oxidoreductase Chain: A: pentalenic acid synthase; the crystal structure of cytochrome p450 105d7 from streptomyces2 avermitilis in complex with diclofenac
c4uzyA_ motor protein Chain: A: flagellar associated protein; crystal structure of the chlamydomonas ift70 and ift52 complex
c4ql6A_ hydrolase Chain: A: carboxy-terminal processing protease; structure of c. trachomatis ct441
c4r4ne_ viral protein/immune system/inhibitor Chain: E: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c2mgqA_ dna binding protein Chain: A: homeobox protein ceh-37; structure of ceh37 homeodomain
c4tvvA_ hydrolase Chain: A: tyrosine phosphatase ii superfamily protein; crystal structure of lppa from legionella pneumophila
c4o7kA_ antitumor protein Chain: A: protein osa; crystal structure of oncogenic suppression activity protein - a2 plasmid fertility inhibition factor
c4rcnA_ ligase Chain: A: long-chain acyl-coa carboxylase; structure and function of a single-chain, multi-domain long-chain2 acyl-coa carboxylase
c4rk9B_ transport protein Chain: B: carbohydrate abc transporter substrate-binding protein crystal structure of sugar transporter bl01359 from bacillus2 licheniformis, target efi-510856, in complex with stachyose
c4p9jC_ transport protein Chain: C: ryanodine receptor 1; crystal structure of rabbit ryanodine receptor 1 spry2 domain (1070-2 1246)
c4rk2B_ transport protein Chain: B: putative sugar abc transporter, substrate-binding protein; crystal structure of sugar transporter rhe_pf00321 from rhizobium2 etli, target efi-510806, an open conformation
c4r8pL_ structural protein/dna Chain: L: e3 ubiquitin-protein ligase ring2, ubiquitin-conjugating crystal structure of the ring1b/bmi1/ubch5c prc1 ubiquitylation module2 bound to the nucleosome core particle
c4r4nb_ viral protein/immune system/inhibitor Chain: B: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4war2_ ribosome/antibiotic Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to negamycin. this2 file contains the 50s subunit of the second 70s ribosome.
c4uzyB_ motor protein Chain: B: intraflagellar transport protein ift52; crystal structure of the chlamydomonas ift70 and ift52 complex
c4u4iA_ oxidoreductase Chain: A: cu/zn superoxide dismutase; megavirus chilensis superoxide dismutase
c4umoB_ signaling protein Chain: B: potassium voltage-gated channel subfamily kqt member 1; crystal structure of the kv7.1 proximal c-terminal domain2 in complex with calmodulin
c3j81i_ ribosome Chain: I: es8; cryoem structure of a partial yeast 48s preinitiation complex
c4r9mC_ transferase Chain: C: spermidine n(1)-acetyltransferase; crystal structure of spermidine n-acetyltransferase from escherichia2 coli
c4r4ni_ viral protein/immune system/inhibitor Chain: I: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4q6qA_ hydrolase Chain: A: conserved hypothetical secreted protein; structural analysis of the zn-form ii of helicobacter pylori csd4, a2 d,l-carboxypeptidase
c4ndkA_ fluorescent protein, de novo protein Chain: A: e23p-yfp, chimeric construct; crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp
c4r4na_ viral protein/immune system/inhibitor Chain: A: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4qbuA_ transferase Chain: A: zmaa; structure of the acyl transferase domain of zmaa
c4v2cD_ apoptosis Chain: D: protein unc5d; mouse flrt2 lrr domain in complex with rat unc5d ig1 domain
c4cciA_ sugar binding protein Chain: A: accumulation associated protein; structure of aap a-domain (residues 351-605) from2 staphylococcus epidermidis
c4rl6A_ oxidoreductase Chain: A: saccharopine dehydrogenase; crystal structure of the q04l03_strp2 protein from streptococcus2 pneumoniae. northeast structural genomics consortium target spr105
c4r4ns_ viral protein/immune system/inhibitor Chain: S: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4uosA_ de novo protein Chain: A: designed helical bundle; thermodynamic hyperstability in parametrically designed2 helical bundles
c4uzzB_ motor protein Chain: B: intraflagellar transporter-like protein; crystal structure of the ttift52-46 complex
c4wnyA_ signaling protein Chain: A: universal stress protein; crystal structure of a protein from the universal stress protein2 family from burkholderia pseudomallei
c4r4np_ viral protein/immune system/inhibitor Chain: P: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4wap2_ ribosome/antibiotic Chain: 2: 50s ribosomal protein l34; crystal structure of the e. coli ribosome bound to negamycin. this2 file contains the 50s subunit of the first 70s ribosome.
c3j80g_ ribosome Chain: G: es6; cryoem structure of 40s-eif1-eif1a preinitiation complex
c3j81j_ ribosome Chain: J: us4; cryoem structure of a partial yeast 48s preinitiation complex
c4uotE_ de novo protein Chain: E: designed helical bundle 5h2l; thermodynamic hyperstability in parametrically designed2 helical bundles
c2mvbA_ unknown function Chain: A: uncharacterized protein; nmr structure of hypothetical protein np_344732.1 from streptococcus2 pneumoniae tigr4
c4uotC_ de novo protein Chain: C: designed helical bundle 5h2l; thermodynamic hyperstability in parametrically designed2 helical bundles
c4wnrA_ signaling protein Chain: A: leucine-rich-repeat protein; structure of methanosarcina barkeri roco2 roccordc bound to gdp
c4rmmA_ unknown function Chain: A: putative uncharacterized protein; crystal structure of the q7nvp2_chrvo protein from chromobacterium2 violaceum. northeast structural genomics consortium target cvr191
c4r4nv_ viral protein/immune system/inhibitor Chain: V: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4rn7A_ hydrolase Chain: A: n-acetylmuramoyl-l-alanine amidase; the crystal structure of n-acetylmuramoyl-l-alanine amidase from2 clostridium difficile 630
c4uotB_ de novo protein Chain: B: designed helical bundle 5h2l; thermodynamic hyperstability in parametrically designed2 helical bundles
c3j81h_ ribosome Chain: H: es7; cryoem structure of a partial yeast 48s preinitiation complex
c2mquA_ toxin Chain: A: neurotoxin hm-3; spatial structure of hm-3, a membrane-active spider toxin affecting2 sodium channels
c4rk5A_ transcription regulator Chain: A: transcriptional regulator, laci family; crystal structure of laci family transcriptional regulator from2 lactobacillus casei, target efi-512911, with bound sucrose
c4r4nm_ viral protein/immune system/inhibitor Chain: M: hiv-1 gp120; crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
c4nf7A_ hydrolase Chain: A: endo-1,4-beta-glucanase cel5c; crystal structure of the gh5 family catalytic domain of endo-1,4-beta-2 glucanase cel5c from butyrivibrio proteoclasticus.
c4v2aA_ apoptosis Chain: A: netrin receptor unc5a; human unc5a ectodomain
c4uotD_ de novo protein Chain: D: designed helical bundle 5h2l; thermodynamic hyperstability in parametrically designed2 helical bundles
c3j80h_ ribosome Chain: H: es7; cryoem structure of 40s-eif1-eif1a preinitiation complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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