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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Nov 01

Fold library idPDB HeaderMoleculeTitle
c4up8A_ ligase Chain: A: lysine--trna ligase; crystal structure of entamoeba histolytica lysyl-trna synthetase apo2 form
c4r9fA_ sugar binding protein Chain: A: mbp1; cpmnbp1 with mannobiose bound
c4po5E_ photosynthesis Chain: E: allophycocyanin subunit alpha-b; crystal structure of allophycocyanin b from synechocystis pcc 6803
c4qslE_ ligase Chain: E: pyruvate carboxylase; crystal structure of listeria monocytogenes pyruvate carboxylase
c4wfdA_ hydrolase Chain: A: exosome complex exonuclease rrp6; structure of the rrp6-rrp47-mtr4 interaction
c4rapD_ transferase Chain: D: glycosyltransferase tibc; crystal structure of bacterial iron-containing dodecameric2 glycosyltransferase tibc from enterotoxigenic e.coli h10407
c3wugA_ hydrolase Chain: A: endo-1,4-beta-xylanase a; the mutant crystal structure of b-1,4-xylanase (xynas9_v43p/g44e) with2 xylobiose from streptomyces sp. 9
c4wfcF_ hydrolase Chain: F: exosome complex protein lrp1; structure of the rrp6-rrp47 interaction
c4rk6B_ transcription regulator Chain: B: glucose-resistance amylase regulator; crystal structure of laci family transcriptional regulator ccpa from2 weissella paramesenteroides, target efi-512926, with bound glucose
c4uy86_ ribosome Chain: 6: ribosomal l7 protein; molecular basis for the ribosome functioning as a l-tryptophan sensor2 - cryo-em structure of a tnac stalled e.coli ribosome
c4obuG_ lyase Chain: G: pyridoxal-dependent decarboxylase domain protein; ruminococcus gnavus tryptophan decarboxylase rumgna_01526 (apo)
c4w7yB_ transport protein Chain: B: b-cell receptor-associated protein 29; dimeric bap29 vded with disulfide bonds in crystal contacts
c4rk1F_ transcription regulator Chain: F: ribose transcriptional regulator; crystal structure of laci family transcriptional regulator from2 enterococcus faecium, target efi-512930, with bound glucose
c4r8aF_ hydrolase/dna Chain: F: uncharacterized protein; crystal structure of pafan1 - 5' flap dna complex
c4qslC_ ligase Chain: C: pyruvate carboxylase; crystal structure of listeria monocytogenes pyruvate carboxylase
c4ca9B_ isomerase Chain: B: 39 kda fk506-binding nuclear protein; structure of the nucleoplasmin-like n-terminal domain of drosophila2 fkbp39
c4whjA_ antiviral protein, hydrolase Chain: A: interferon-induced gtp-binding protein mx2; myxovirus resistance protein 2 (mxb)
c4uuyA_ transport protein Chain: A: vacuolar membrane protein pep3; structural identification of the vps18 beta-propeller reveals2 a critical role in the hops complex stability and function.
c4o6xA_ protein binding Chain: A: ankyrin-3; crystal structure of human ankyrin g death domain
c3wknG_ immune system Chain: G: affinger p17; crystal structure of the artificial protein affinger p17 (af.p17)2 complexed with fc fragment of human igg
c4cbpA_ cell adhesion Chain: A: neural/ectodermal development factor imp-l2; crystal structure of neural ectodermal development factor2 imp-l2.
c4qskB_ ligase Chain: B: pyruvate carboxylase; crystal structure of l. monocytogenes pyruvate carboxylase in complex2 with cyclic-di-amp
c2mn4A_ de novo protein Chain: A: computational designed protein based on structure template nmr solution structure of a computational designed protein based on2 structure template 1cy5
c4r2yA_ ligase Chain: A: anaphase-promoting complex subunit 11; crystal structure of apc11 ring domain
c4oumA_ signaling protein Chain: A: caprin-2; crystal structure of human caprin-2 c1q domain
c2momC_ membrane protein Chain: C: lysosome-associated membrane glycoprotein 2; structural insights of tm domain of lamp-2a in dpc micelles
c4upaA_ ligase Chain: A: lysine--trna ligase; crystal structure of entamoeba histolytica lysyl-trna synthetase in2 complex with amppnp
c4wkyB_ transferase Chain: B: beta-ketoacyl synthase; structure of the amino-terminal beta-ketoacyl synthase domain of a2 polyketide synthase from streptomyces albus
c4ri0A_ hydrolase Chain: A: serine protease htra3; serine protease htra3, mutationally inactivated
c4uw9A_ isomerase Chain: A: beta-phosphoglucomutase; the crystal structural of archaeal beta-phosphoglucomutase2 from hyper-thermophilic pyrococcus sp. strain st 04
c4tv6A_ lyase Chain: A: 2-dehydro-3-deoxyglucarate aldolase; crystal structure of citrate synthase variant sbng e151q
c4wfcB_ hydrolase Chain: B: exosome complex protein lrp1; structure of the rrp6-rrp47 interaction
c4oxqB_ metal binding protein Chain: B: manganese abc transporter, periplasmic-binding protein structure of staphylococcus pseudintermedius metal-binding protein2 sita in complex with zinc
c4rk0C_ transcription regulator Chain: C: laci family sugar-binding transcriptional regulator; crystal structure of laci family transcriptional regulator from2 enterococcus faecalis v583, target efi-512923, with bound glucose
c4uy82_ ribosome Chain: 2: 50s ribosomal protein l34; PDB Fragment:residues 5-24;
c4wd9B_ biosynthetic protein Chain: B: nisin biosynthesis protein nisb; crystal structure of trna-dependent lantibiotic dehydratase nisb in2 complex with nisa leader peptide
c4qzvB_ hydrolase/viral protein Chain: B: spike protein s1; bat-derived coronavirus hku4 uses mers-cov receptor human cd26 for2 cell entry
c4rh6A_ toxin Chain: A: exotoxin 3, putative; 2.9 angstrom crystal structure of putative exotoxin 3 from2 staphylococcus aureus.
c4widA_ viral protein Chain: A: rhul123; crystal structure of the immediate-early 1 protein (ie1) at 2.312 angstrom (tetragonal form after crystal dehydration)
c4w7sA_ hydrolase Chain: A: pre-mrna-splicing atp-dependent rna helicase prp28; crystal structure of the yeast dead-box splicing factor prp28 at 2.542 angstroms resolution
c2momB_ membrane protein Chain: B: lysosome-associated membrane glycoprotein 2; structural insights of tm domain of lamp-2a in dpc micelles
c4rglA_ dna binding protein Chain: A: filamentation induced by camp protein fic; crystal structure of a fic family protein (dde_2494) from2 desulfovibrio desulfuricans g20 at 2.70 a resolution
c2mpvA_ protein binding Chain: A: major fimbrial subunit of aggregative adherence fimbria ii structural insight into host recognition and biofilm formation by2 aggregative adherence fimbriae of enteroaggregative esherichia coli
c2mn5A_ antimicrobial protein Chain: A: copsin; nmr structure of copsin
c4uy87_ ribosome Chain: 7: tryptophanase; PDB Fragment:residues 7-85;
c2mlbA_ de novo protein Chain: A: redesigned ubiquitin; nmr solution structure of a computational designed protein based on2 template of human erythrocytic ubiquitin
c2mplA_ transcription Chain: A: zinc finger protein zfpm1; solution structure of the pr domain of fog-1


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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