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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Sep 13

Fold library idPDB HeaderMoleculeTitle
c4pq1B_ oxidoreductase Chain: B: putative electron transport related protein; crystal structure and functional implications of a dsbf homologue from2 corynebacterium diphtheriae
c4r7oE_ hydrolase Chain: E: glycerophosphoryl diester phosphodiesterase, putative; crystal structure of putative glycerophosphoryl diester2 phosphodiesterasefrom bacillus anthraci
c3wsvC_ oxidoreductase Chain: C: l-lactate dehydrogenase; crystal structure of minor l-lactate dehydrogenase from enterococcus2 mundtii in the ligands-unbound form
c4tszM_ transferase Chain: M: dna polymerase iii subunit beta; crystal structure of dna polymerase sliding clamp from pseudomonas2 aeruginosa with ligand
c4cqmJ_ oxidoreductase Chain: J: carbonyl reductase family member 4; crystal structure of heterotetrameric human ketoacyl2 reductase complexed with nad and nadp
c4q76B_ transferase Chain: B: cysteine desulfurase 2, chloroplastic; crystal structure of nfs2 c384s mutant, the plastidial cysteine2 desulfurase from arabidopsis thaliana
c4u8tD_ rna binding protein/rna Chain: D: zyro0g01672p; crystal structure of yth domain of zygosaccharomyces rouxii mrb12 protein in complex with n6-methyladenosine rna
c4tr6A_ dna binding protein Chain: A: dna polymerase iii subunit beta; crystal structure of dna polymerase sliding clamp from bacillus2 subtilis
c4w9uD_ oxidoreductase Chain: D: acyl-coa dehydrogenase; crystal structure of an acyl-coa dehydrogenase from brucella2 melitensis
c4o8jB_ ligase/rna Chain: B: rna 3'-terminal phosphate cyclase; crystal structure of rtca, the rna 3'-terminal phosphate cyclase from2 pyrococcus horikoshii, in complex with racaaa3'phosphate and adenine.
c4o6kA_ immune system Chain: A: interleukin 22; the crystal structure of zebrafish il-22
c4toqC_ hydrolase Chain: C: class iii chitinase; crystal structure of class iii chitinase from pomegranate provides the2 insight into its metal storage capacity
c4r5oD_ structural genomics, unknown function Chain: D: quinonprotein alcohol dehydrogenase-like protein; crystal structure of a quinonprotein alcohol dehydrogenase-like2 protein (bt1487) from bacteroides thetaiotaomicron vpi-5482 at 2.64 a3 resolution
c4w9rA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of uncharacterised protein coch_1243 from2 capnocytophaga ochracea dsm 7271
c4r7kA_ structural genomics, unknown function Chain: A: hypothetical protein jhp0584; 1.88 angstrom resolution crystal structure of hypothetical protein2 jhp0584 from helicobacter pylori.
c4p9gA_ oxidoreductase Chain: A: 2,4'-dihydroxyacetophenone dioxygenase; structure of the 2,4'-dihydroxyacetophenone dioxygenase from2 alcaligenes sp.
c4qblF_ hydrolase Chain: F: vrr-nuc; vrr_nuc domain protein
c4r0yA_ protein binding Chain: A: maltose-binding periplasmic protein, disks large-associated structure of maltose-binding protein fusion with the c-terminal gh12 domain of guanylate kinase-associated protein from rattus norvegicus
c4qncA_ membrane protein Chain: A: chemical transport protein; crystal structure of a semisweet in an occluded state
c4csiB_ hydrolase Chain: B: cellulase; crystal structure of the thermostable cellobiohydrolase2 cel7a from the fungus humicola grisea var. thermoidea.
c4qbnA_ hydrolase Chain: A: nuclease; vrr_nuc domain
c4qndA_ membrane protein Chain: A: chemical transport protein; crystal structure of a semisweet
c4u13B_ transferase Chain: B: putative polyketide cyclase sma1630; crystal structure of putative polyketide cyclase (protein sma1630)2 from sinorhizobium meliloti at 2.3 a resolution
c2mdjA_ transferase Chain: A: histone-lysine n-methyltransferase setd2; solution structure of ww domain with polyproline stretch (pp2ww) of2 hypb
c4mn5A_ transferase Chain: A: sensor protein kinase walk; crystal structure of pas domain of s. aureus yycg
c4nq3B_ hydrolase Chain: B: cyanuric acid amidohydrolase; crystal structure of cyanuic acid hydrolase from a. caulinodans
c4oi6A_ metal binding protein Chain: A: nickel responsive protein; crystal structure analysis of nickel-bound form sco4226 from2 streptomyces coelicolor a3(2)
c4r7qA_ signaling protein Chain: A: sensor histidine kinase; the structure of a sensor domain of a histidine kinase from vibrio2 cholerae o1 biovar eltor str. n16961
c3wpwB_ membrane protein Chain: B: pomb; structure of pombc5, a periplasmic fragment of pomb from vibrio
c4p6bB_ hydrolase Chain: B: est-y29; crystal structure of est-y29,a novel penicillin-binding protein/beta-2 lactamase homolog from a metagenomic library
c4w9xA_ transferase Chain: A: bmp-2-inducible protein kinase; crystal structure of bmp-2-inducible kinase in complex with2 baricitinib
c2mjfA_ protein binding Chain: A: ribosome assembly 1 protein; solution structure of the complex between the yeast rsa1 and hit12 proteins
c4u1eB_ translation Chain: B: eukaryotic translation initiation factor 3 subunit b; crystal structure of the eif3b-ctd/eif3i/eif3g-ntd translation2 initiation complex
c4mkrC_ plant protein Chain: C: zingiber officinale double bond reductase; structure of the apo form of a zingiber officinale double bond2 reductase
c2mjfB_ protein binding Chain: B: protein hit1; solution structure of the complex between the yeast rsa1 and hit12 proteins
c4nssA_ unknown function Chain: A: mycobacterial protein; a structural and functional investigation of a novel protein from2 mycobacterium smegmatis implicated in mycobacterial macrophage3 survivability
c4ttmA_ plant protein Chain: A: kalata-b1; racemic structure of kalata b1 (kb1)
c4r7rA_ lipid binding protein Chain: A: putative lipoprotein; crystal structure of putative lipoprotein from clostridium perfringens
c4ttoA_ plant protein Chain: A: kalata-b1; quasi-racemic structure of [v25a] kalata b1
c4ttnA_ plant protein Chain: A: kalata-b1; quasi-racemic structure of [g6a]kalata b1
c4nikB_ oncoprotein/immune system Chain: B: single-chain fv fragment antibody; structure of human gankyrin in complex to the single chain antibody f5
c4u1dA_ translation Chain: A: eukaryotic translation initiation factor 3 subunit a; structure of the pci domain of translation initiation factor eif3a
c4qb0A_ viral protein Chain: A: nucleoprotein; the crystal structure of the c-terminal domain of ebola (zaire)2 nucleoprotein
c4qxaB_ protein transport/protein binding Chain: B: small g protein signaling modulator 1; crystal structure of the rab9a-rutbc2 rbd complex
c4u1cC_ translation Chain: C: eukaryotic translation initiation factor 3 subunit c; crystal structure of the eif3a/eif3c pci-domain heterodimer
c4u1fA_ translation Chain: A: eukaryotic translation initiation factor 3 subunit b; crystal structure of middle domain of eukaryotic translation2 initiation factor eif3b
c4plaA_ transferase,hydrolase Chain: A: chimera protein of phosphatidylinositol 4-kinase type 2- crystal structure of phosphatidyl inositol 4-kinase ii alpha in2 complex with atp
c4c3tA_ lyase Chain: A: carbonate dehydratase; the carbonic anhydrase from thermovibrio ammonificans reveals an2 interesting intermolecular disulfide contributing to increasing3 thermal stability of this enzyme
c4urtB_ protein binding Chain: B: netrin receptor dcc; the crystal structure of a fragment of netrin-1 in complex2 with fn5-fn6 of dcc
c4r6kA_ transport protein Chain: A: solute-binding protein; crystal structure of abc transporter substrate-binding protein yeso2 from bacillus subtilis, target efi-510761, an open conformation
c4ttlA_ toxin Chain: A: alpha-conotoxin vc1a; racemic structure of cyclic vc1.1 (cvc1.1-1)
c4r6hA_ transport protein Chain: A: solute binding protein msme; crystal structure of putative binding protein msme from bacillus2 subtilis subsp. subtilis str. 168, target efi-510764, an open3 conformation
c4qboA_ hydrolase Chain: A: nuclease; vrr_nuc domain
c4r6yA_ transport protein Chain: A: putative 2-aminoethylphosphonate-binding periplasmic crystal structure of solute-binding protein stm0429 from salmonella2 enterica subsp. enterica serovar typhimurium str. lt2, target efi-3 510776, a closed conformation, in complex with glycerol and acetate
c4u1eG_ translation Chain: G: eukaryotic translation initiation factor 3 subunit g; crystal structure of the eif3b-ctd/eif3i/eif3g-ntd translation2 initiation complex
c4nspA_ hydrolase Chain: A: endonuclease v; crystal structure of human endov


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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