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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Sep 06

Fold library idPDB HeaderMoleculeTitle
c4q7xA_ hydrolase Chain: A: serine protease 57; neutrophil serine protease 4 (prss57) apo form 1
c4c2jA_ transferase Chain: A: 3-ketoacyl-coa thiolase, mitochondrial; crystal structure of human mitochondrial 3-ketoacyl-coa2 thiolase in complex with coa
c4tvsB_ membrane protein Chain: B: torsin-1a-interacting protein 1; lap1(aa356-583), h.sapiens, bound to vhh-bs1
c3whpA_ gene regulation Chain: A: probable transcriptional regulator; crystal structure of the c-terminal domain of themus thermophilus litr2 in complex with cobalamin
c2mkcB_ splicing Chain: B: pre-mrna leakage protein 1; cooperative structure of the heterotrimeric pre-mrna retention and2 splicing complex
c4mhuB_ oxidoreductase Chain: B: ectoine hydroxylase; crystal structure of ectd from s. alaskensis with bound fe
c4qqvA_ signaling protein Chain: A: interleukin-3 receptor class 2 subunit beta; extracellular domains of mouse il-3 beta receptor
c4ppuA_ isomerase Chain: A: chorismate mutase 1, chloroplastic; crystal structure of atcm1 with tyrosine bound in allosteric site
c4d02A_ electron transport Chain: A: anaerobic nitric oxide reductase flavorubredoxin; the crystallographic structure of flavorubredoxin from2 escherichia coli
c4u3eA_ oxidoreductase Chain: A: ribonucleoside triphosphate reductase; anaerobic ribonucleotide reductase
c4p2jA_ signaling protein Chain: A: mkiaa0254 protein; crystal structure of the mouse snx19 px domain with bound sulphate ion
c4w20n_ ribosome Chain: N: ribosomal protein el15; structure of the mammalian 60s ribosomal subunit (this entry contains2 the large ribosomal proteins)
c4mjkA_ protein binding Chain: A: crispr protein; crystal structure of a crispr protein from archaeoglobus fulgidus
c4mfkA_ transferase Chain: A: putative uncharacterized protein tcp24; the crystal structure of acyltransferase in complex with decanoyl-coa
c4pu6A_ hydrolase Chain: A: l-asparaginase alpha subunit; crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with k+ cations
c3wolB_ hydrolase Chain: B: dipeptidyl aminopeptidase bii; crystal structure of the dap bii dipeptide complex i
c3wh5A_ hydrolase Chain: A: beta-glucosidase; crystal structure of gh1 beta-glucosidase td2f2
c4pv3D_ hydrolase Chain: D: l-asparaginase beta subunit; crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
c2mkcC_ splicing Chain: C: pre-mrna-splicing factor cwc26; cooperative structure of the heterotrimeric pre-mrna retention and2 splicing complex
c3wu2y_ electron transport, photosynthesis Chain: Y: photosystem ii reaction center protein ycf12; crystal structure analysis of photosystem ii complex
c4u7sA_ immune system Chain: A: sdab a3; homodimeric single domain antibody (sdab) against staphylococcal2 enterotoxin b (seb) crystallized for 5 months
c4k40B_ hydrolase Chain: B: gdsl-like lipase/acylhydrolase family protein; peptidoglycan o-acetylesterase in action, 0 min
c4mbuB_ transferase Chain: B: similar to n-acetyltransferase; crystal structure of n-acetyltransferase from staphylococcus aureus2 mu50
c4m6zB_ oxidoreductase Chain: B: acyl-[acyl-carrier-protein] dehydrogenase mbtn; crystal structure of an acyl-acp dehydrogenase
c4uqtA_ translation Chain: A: u2 snrnp component ist3; rrm-peptide structure in res complex
c4mitB_ signaling protein Chain: B: rho family gtpase; crystal structure of e. histolytica racc bound to the ehpak4 pbd
c3wu2t_ electron transport, photosynthesis Chain: T: photosystem ii reaction center protein t; crystal structure analysis of photosystem ii complex
c4qpoB_ transcription Chain: B: relaxosome protein tram; mechanistic basis of plasmid-specific dna binding of the f plasmid2 regulatory protein, tram
c4uqtB_ translation Chain: B: pre-mrna-splicing factor cwc26; rrm-peptide structure in res complex
c2mkcA_ splicing Chain: A: u2 snrnp component ist3; cooperative structure of the heterotrimeric pre-mrna retention and2 splicing complex
c4mitG_ signaling protein Chain: G: serine/threonine protein kinase pak, putative; crystal structure of e. histolytica racc bound to the ehpak4 pbd
c4w66A_ transferase Chain: A: glutathione s-transferase domain protein; crystal structure of glutathione s-transferase domain protein from2 haliangium ochraceum dsm 14365
c4w22n_ ribosome Chain: N: ribosomal protein el15; structure of the 80s mammalian ribosome bound to eef2 (this entry2 contains the large ribosomal subunit proteins)
c2mqcA_ structural genomics, unknown function Chain: A: uncharacterized protein; nmr structure of the hypothetical protein bvu_0925 from bacteroides2 vulgatus atcc 8482
c4mheA_ immune system Chain: A: c-c motif chemokine 18; crystal structure of cc-chemokine 18
c2mcfA_ unknown function Chain: A: uncharacterized protein; nmr structure of tgam
c4w27n_ ribosome Chain: N: ribosomal protein el15; structure of the translating mammalian ribosome-sec61 complex (this2 entry contains the large ribosomal subunit proteins)
c4mitE_ signaling protein Chain: E: serine/threonine protein kinase pak, putative; crystal structure of e. histolytica racc bound to the ehpak4 pbd
c3wu2l_ electron transport, photosynthesis Chain: L: photosystem ii reaction center protein l; crystal structure analysis of photosystem ii complex
c4mhlA_ protein binding Chain: A: interleukin-11; the crystal structure of human interleukin-11
c2mqbA_ hydrolase Chain: A: probable beta-lactamase; nmr structure of putative beta-lactamase (np_372339.1) from2 staphylococcus aureus mu50
c3wu2T_ electron transport, photosynthesis Chain: T: photosystem ii reaction center protein t; crystal structure analysis of photosystem ii complex
c4qlaA_ hydrolase Chain: A: juvenile hormone epoxide hydrolase; crystal structure of juvenile hormone epoxide hydrolase from the2 silkworm bombyx mori
c4w25n_ ribosome Chain: N: ribosomal protein el15; structure of the idle mammalian ribosome-sec61 complex (this entry2 contains the large ribosomal subunit proteins)
c2mjmA_ signaling protein, protein binding Chain: A: protein nlrc5; the solution nmr structure of the nlrc5 caspase recruitment domain2 (card)
c4u7xA_ transferase Chain: A: ribokinase:carbohydrate kinase, pfkb; crystal structure of fructokinase from brucella abortus 2308
c4qlaB_ hydrolase Chain: B: juvenile hormone epoxide hydrolase; crystal structure of juvenile hormone epoxide hydrolase from the2 silkworm bombyx mori
c4q5uC_ calcium binding protein/protein binding Chain: C: serine/threonine-protein phosphatase 2b catalytic subunit structure of calmodulin bound to its recognition site from calcineurin
c4mvfA_ transferase/transferase inhibitor Chain: A: calcium-dependent protein kinase 2; crystal structure of plasmodium falciparum cdpk2 complexed with2 inhibitor staurosporine
c2mqdA_ structural genomics, unknown function Chain: A: uncharacterized protein; nmr structure of the hypotheical protein lreu_0056 from lactobacillus2 reuteri
c3wu2Y_ electron transport, photosynthesis Chain: Y: photosystem ii reaction center protein ycf12; crystal structure analysis of photosystem ii complex
c3wu2L_ electron transport, photosynthesis Chain: L: photosystem ii reaction center protein l; crystal structure analysis of photosystem ii complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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