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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Aug 09

Fold library idPDB HeaderMoleculeTitle
c4oouB_ hydrolase Chain: B: beta-1,4-mannanase; crystal structure of beta-1,4-d-mannanase from cryptopygus antarcticus
c4cu5F_ hydrolase Chain: F: endolysin; c-terminal domain of endolysin from phage cd27l is a2 trigger and release factor
c1vvnU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-u on the ribosome
c4pu4C_ toxin/antitoxin/dna Chain: C: toxin-antitoxin system antidote transcriptional repressor shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
c4tyzB_ unknown function Chain: B: uncharacterized protein; crystal structure of the c-terminal domain of an unknown protein from2 leishmania infantum
c2mr6A_ de novo protein Chain: A: de novo designed protein or462; solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or462
c4qdkB_ transferase Chain: B: magnesium-protoporphyrin o-methyltransferase; crystal structure of magnesium protoporphyrin ix methyltransferase2 (chlm) from synechocystis pcc 6803 with bound sah
c4cu2A_ hydrolase Chain: A: endolysin; c-terminal domain of ctp1l endolysin mutant v195p that2 reduces autoproteolysis
c1vvrU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-a on the ribosome
c4kx1U_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-g on the ribosome
c4m1xB_ unknown function Chain: B: uncharacterized protein 201phi2-1p060; tetrameric ring structure of 201phi2-1p060 from pseudomonas phage2 201phi2-1
c4mmnD_ oxidoreductase Chain: D: putative uncharacterized protein ta0848; structural and biochemical analysis of type ii free methionine-r-2 sulfoxide reductase from thermoplasma acidophilum
c1vxkU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of trna proline (cgg) bound to codon ccg-g on the2 ribosome
c4pcgD_ viral protein Chain: D: vp1; structure of human polyomavirus 6 (hpyv6) vp1 pentamer
c4mt0A_ membrane protein, tranport protein Chain: A: mtre protein; crystal structure of the open state of the neisseria gonorrhoeae mtre2 outer membrane channel
c4mt1A_ membrane protein, tranport protein Chain: A: drug efflux protein; crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
c1vvpU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-a on the ribosome
c4obxD_ transferase Chain: D: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, crystal structure of yeast coq5 in the apo form
c4cwuT_ virus Chain: T: core-capsid bridging protein; crystal structure derived models of adenovirus cement2 proteins at 3.8a
c4o4oB_ lyase Chain: B: phycocyanobilin lyase cpct; crystal structure of phycobiliprotein lyase cpct
c1vvvU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccg-g on the ribosome
c4pw8C_ oxidoreductase Chain: C: tryptophan 2,3-dioxygenase; human tryptophan 2,3-dioxygenase
c4trrH_ oxidoreductase Chain: H: putative d-beta-hydroxybutyrate dehydrogenase; crystal structure of a putative putative d-beta-hydroxybutyrate2 dehydrogenase from burkholderia cenocepacia j2315
c4pchE_ viral protein Chain: E: vp1; structure of human polyomavirus 7 (hpyv7) vp1 pentamer
c4ojkC_ hydrolase/protein binding Chain: C: cgmp-dependent protein kinase 2; structure of the cgmp dependent protein kinase ii and rab11b complex
c2mnyA_ oxidoreductase Chain: A: lysine-specific demethylase 5b; nmr structure of kdm5b phd1 finger
c3wmtA_ hydrolase Chain: A: probable feruloyl esterase b-1; crystal structure of feruloyl esterase b from aspergillus oryzae
c4p27A_ allergen Chain: A: venom allergen-like (val) 4 protein; structure of schistosoma mansoni venom allergen-like protein 42 (smval4)
c4twkB_ transport protein Chain: B: potassium channel subfamily k member 2; crystal structure of human two pore domain potassium ion channel trek12 (k2p2.1)
c1vx8U_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of trna proline (cgg) bound to codon ccc-u on the2 ribosome
c4mt5B_ protein binding Chain: B: mucus binding proteinn; crystal structure of mub-rv
c4pu5A_ toxin Chain: A: toxin-antitoxin system toxin hipa family; shewanella oneidensis toxin antitoxin system toxin protein hipa bound2 with amppnp and mg
c1vxsU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of trna proline (cgg) bound to codon ccc-g on the2 ribosome
c4qfsC_ signaling protein/inhibitor/activator Chain: C: 5'-amp-activated protein kinase subunit gamma-1; structure of ampk in complex with br2-a769662core activator and2 staurosporine inhibitor
c1vxyo_ ribosome Chain: O: 60s ribosomal protein l15; structures of yeast 80s ribosome-trna complexes in the rotated and2 non-rotated conformations (class i - non-rotated ribosome with 23 trnas, this entry contains the large ribosomal subunit proteins)
c4m16A_ cell adhesion Chain: A: bartonella effector protein (bep) substrate of virb t4ss; crystal structure of the n-terminal fic domain of bartonella effector2 protein (bep); substrate of virb t4ss (virb-translocated bep effector3 protein) from bartonella sp. ar 15-3
c4tt3J_ hydrolase Chain: J: atpase inhibitor, mitochondrial; the pathway of binding of the intrinsically disordered mitochondrial2 inhibitor protein to f1-atpase
c3wfwA_ oxygen transport Chain: A: hemoglobin-like flavoprotein fused to roadblock/lc7 domain; crystal structure of the closed form of the hgbrl's globin domain
c4uucA_ signaling protein Chain: A: ankyrin repeat and socs box protein 11; crystal structure of human asb11 ankyrin repeat domain
c4lypA_ hydrolase Chain: A: exo-beta-1,4-mannosidase; crystal structure of glycoside hydrolase family 5 mannosidase from2 rhizomucor miehei
c4lu4A_ transferase Chain: A: putative cell filamentation protein; crystal structure of the n-terminal fic domain of a putative cell2 filamentation protein (virb-translocated bep effector protein) from3 bartonella quintana
c4bzpB_ transferase Chain: B: bifunctional enzyme cysn/cysc; structure of the mycobacterium tuberculosis aps kinase cysc2 in complex with adp
c4qfrA_ signaling protein/inhibitor/activator Chain: A: 5'-amp-activated protein kinase catalytic subunit alpha-1; structure of ampk in complex with cl-a769662 activator and2 staurosporine inhibitor
c4pirD_ transport protein Chain: D: 5-hydroxytryptamine receptor 3a; x-ray structure of the mouse serotonin 5-ht3 receptor
c4cwuV_ virus Chain: V: pre-protein vi; crystal structure derived models of adenovirus cement2 proteins at 3.8a
c4u4eA_ transferase Chain: A: thiolase; crystal structure of putative thiolase from sphaerobacter thermophilus2 dsm 20745
c4qwoA_ viral protein Chain: A: profilin; 1.52 angstrom crystal structure of a42r profilin-like protein from2 monkeypox virus zaire-96-i-16
c1vvlU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-u on the ribosome
c4p4oA_ transferase/dna Chain: A: dna polymerase beta; crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
c4u5tB_ transcription/transcription inhibitor Chain: B: vbp leucine zipper; crystal structure of vbp leucine zipper with bound arylstibonic acid
c4qvuA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bce0241) from bacillus2 cereus atcc 10987 at 2.65 a resolution
c4kwzU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-g on the ribosome
c1vxiU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of trna proline (cgg) bound to codon ccc-u on the2 ribosome
c4pw8D_ oxidoreductase Chain: D: tryptophan 2,3-dioxygenase; human tryptophan 2,3-dioxygenase
c1vxmU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of trna proline (cgg) bound to codon ccg-g on the2 ribosome
c3wuqA_ motor protein Chain: A: cytoplasmic dynein 1 heavy chain 1; structure of the entire stalk region of the dynein motor domain
c2mm0A_ toxin Chain: A: host-selective toxin protein; solution structures of active ptr toxb and its inactive homolog2 highlight protein dynamics as a modulator of toxin activity
c4d0qA_ lyase Chain: A: hyaluronate lyase; hyaluronan binding module of the streptococcal pneumoniae2 hyaluronate lyase
c1vvzU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-u in the absence of paromomycin
c1vxpU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of trna proline (cgg) bound to codon ccc-g on the2 ribosome
c4tt3I_ hydrolase Chain: I: atpase inhibitor, mitochondrial; the pathway of binding of the intrinsically disordered mitochondrial2 inhibitor protein to f1-atpase
c1vxvo_ ribosome Chain: O: 60s ribosomal protein l15; structures of yeast 80s ribosome-trna complexes in the rotated and2 non-rotated conformations (class ii - rotated ribosome with 1 trna,3 this entry contains the large ribosomal subunit proteins)
c4ojkD_ hydrolase/protein binding Chain: D: cgmp-dependent protein kinase 2; structure of the cgmp dependent protein kinase ii and rab11b complex
c1vvxU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccc-u in the absence of paromomycin
c4cwuU_ virus Chain: U: pre-protein vi; crystal structure derived models of adenovirus cement2 proteins at 3.8a
c1vxvX_ ribosome Chain: X: 60s ribosomal protein l24; structures of yeast 80s ribosome-trna complexes in the rotated and2 non-rotated conformations (class ii - rotated ribosome with 1 trna,3 this entry contains the large ribosomal subunit proteins)
c1vvtU_ ribosome Chain: U: 30s ribosomal protein s21; crystal structure of frameshift suppressor trna sufa6 bound to codon2 ccg-g on the ribosome


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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