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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 May 10

Fold library idPDB HeaderMoleculeTitle
c4bjqB_ transferase Chain: B: penicillin binding protein transpeptidase domain protein; crystal structure of e. coli penicillin binding protein 3,2 domain v88-s165
c4q31A_ lyase Chain: A: cystathione gamma lyase cale6; the crystal structure of cystathione gamma lyase (cale6) from2 micromonospora echinospora
c4ct4B_ rna binding protein Chain: B: probable atp-dependent rna helicase ddx6; cnot1 mif4g domain - ddx6 complex
c4im9C_ transferase Chain: C: dna primase; cystal structure of dnag primase c-terminal domain from vibrio2 cholerae
c4q1vA_ hydrolase Chain: A: putative dipeptidyl aminopeptidase iv; crystal structure of a putative dipeptidyl aminopeptidase iv2 (bacova_01349) from bacteroides ovatus atcc 8483 at 2.48 a resolution
c4lzxB_ metal binding protein Chain: B: iq domain-containing protein g; complex of iqcg and ca2+-free cam
c4kkkA_ hydrolase Chain: A: exoglucanase s; complex structure of catalytic domain of clostridium cellulovorans2 exgs and cellotetraose
c4ct7A_ transcription Chain: A: ccr4-not transcription complex subunit 1; cnot9-cnot1 complex with bound tryptophan
c4pasB_ signaling protein Chain: B: gamma-aminobutyric acid type b receptor subunit 2; heterodimeric coiled-coil structure of human gaba(b) receptor
c4o01D_ transferase Chain: D: bacteriophytochrome; crystal structure of d. radiodurans bacteriophytochrome photosensory2 core module in its illuminated form
c4q6jB_ unknown function Chain: B: lmo0131 protein; crystal structure of eal domain protein from listeria monocytogenes2 egd-e
c4p1nC_ protein transport Chain: C: atg13 mim; crystal structure of atg1-atg13 complex
c4lvnA_ hydrolase/inhibitor/immune system Chain: A: subtilisin-like serine protease; crystal structure of pfsub1-prodomain-nimp.m7 fab complex
c4pbhA_ solute-binding protein Chain: A: trap dicarboxylate transporter, dctp subunit, putative; crystal structure of a trap periplasmic solute binding protein from2 ruegeria pomeroyi dss-3 (spo1773, target efi-510260) with bound3 benzoic acid
c4q6tA_ hydrolase Chain: A: glycosyl hydrolase, family 18; the crystal structure of a class v chitininase from pseudomonas2 fluorescens pf-5
c4q52B_ structural genomics, unknown function Chain: B: uncharacterized protein; 2.60 angstrom resolution crystal structure of a conserved2 uncharacterized protein from chitinophaga pinensis dsm 2588
c4melB_ hydrolase Chain: B: ubiquitin carboxyl-terminal hydrolase 11; crystal structure of the human usp11 dusp-ubl domains
c4kifB_ transferase Chain: B: methyltransferase mppj; crystal structure of methyltransferase from streptomyces hygroscopicus2 complexed with phenylpyruvic acid
c2m6mA_ ligase Chain: A: erad-associated e3 ubiquitin-protein ligase doa10; solution structure of ring domain of e3 ubiquitin ligase doa10
c4p1zD_ rna binding protein Chain: D: piwi-like protein 1; structure of the mid domain from miwi
c4p1wD_ protein transport Chain: D: atg29; crystal structure of atg13(17br)-atg17-atg29-atg31 complex
c4otkA_ oxidoreductase Chain: A: uncharacterized oxidoreductase rv2971/mt3049; mycobacterial enzyme
c4pe6B_ solute-binding protein Chain: B: putative abc transporter; crystal structure of abc transporter solute binding protein from2 thermobispora bispora dsm 43833
c4q62A_ unknown function Chain: A: leucine-rich repeat-and coiled coil-containing protein; crystal structure of leucine-rich repeat- and coiled coil-containing2 protein from legionella pneumophila
c3we7A_ hydrolase Chain: A: putative uncharacterized protein ph0499; crystal structure of diacetylchitobiose deacetylase from pyrococcus2 horikoshii
c4cv5D_ cell cycle Chain: D: protein caf40; yeast not1 cn9bd-caf40 complex
c4pasA_ signaling protein Chain: A: gamma-aminobutyric acid type b receptor subunit 1; heterodimeric coiled-coil structure of human gaba(b) receptor
c2m80A_ oxidoreductase Chain: A: glutaredoxin-8; solution structure of yeast dithiol glutaredoxin grx8
c4bjaA_ transport protein Chain: A: protein glb-12; globin-like protein glb-12 from c.elegans
c4p16A_ hydrolase Chain: A: orf1a; crystal structure of the papain-like protease of middle-east2 respiratory syndrome coronavirus
c4p6iD_ hydrolase Chain: D: crispr-associated endonuclease cas1; crystal structure of the cas1-cas2 complex from escherichia coli
c4l4oA_ hydrolase Chain: A: endo-1,4-beta-xylanase; the crystal structure of cbxyn10b in native form
c4pbqC_ solute-binding protein Chain: C: putative trap periplasmic solute binding protein; crystal structure of a trap periplasmic solute binding protein from2 haemophilus influenzae rdaw (hicg_00826, target efi-510123) with3 bound l-gulonate
c2m29A_ metal binding protein Chain: A: calcium-binding protein 4; nmr structure of ca2+ bound cabp4 n-domain
c2mkbA_ viral protein Chain: A: protease ns2-3; structure of ns2(113-137) gbvb protein
c4p1wA_ protein transport Chain: A: atg29; crystal structure of atg13(17br)-atg17-atg29-atg31 complex
c4cv5A_ cell cycle Chain: A: general negative regulator of transcription subunit 1; yeast not1 cn9bd-caf40 complex
c4bjpA_ transferase Chain: A: penicillin binding protein transpeptidase domain protein; crystal structure of e. coli penicillin binding protein 3
c4p56C_ solute-binding protein Chain: C: putative extracellular solute-binding protein; crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchiseptica, target efi-510038 (bb2442), with bound3 (r)-mandelate and (s)-mandelate
c4oonA_ transferase/transferase inhibitor Chain: A: penicillin-binding protein 1a; crystal structure of pbp1a in complex with compound 17 ((4z,8s,11e,2 14s)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-3 dihydro-2h-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-4 triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid)
c2m28A_ metal binding protein Chain: A: calcium-binding protein 4; nmr structure of ca2+ bound cabp4 c-domain
c4p1nA_ protein transport Chain: A: atg1 tmit; crystal structure of atg1-atg13 complex
c4p6iB_ hydrolase Chain: B: crispr-associated endoribonuclease cas2; crystal structure of the cas1-cas2 complex from escherichia coli
c4jxdA_ transferase Chain: A: fructose-like phosphotransferase enzyme iib component 3; crystal structure of predicted fructose specific iib from escherichia2 coli
c4q51A_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a putative molybdenum cofactor biosynthesis2 protein f from burkholderia cenocepacia j2315
c4pdyA_ transferase Chain: A: aminoglycoside phosphotransferase; crystal structure of aminoglycoside phosphotransferase from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
c4p0fA_ hydrolase inhibitor Chain: A: serine protease inhibitor 4, isoform b; cleaved serpin 42da (c 2 2 21)
c2m7tA_ protein binding Chain: A: cystine knot protein 2.5d; solution nmr structure of engineered cystine knot protein 2.5d
c4pcdA_ solute-binding protein Chain: A: c4-dicarboxylate transport system, substrate-binding crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans och 114 (rd1_1052, target efi-510238) with3 bound l-galactonate
c4pakA_ solute-binding protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a3 nephridial symbiont of the earthworm eisenia foetida, bound to (r)-4 pantoic acid
c4q63A_ unknown function Chain: A: uncharacterized protein lpg0364; crystal structure of legionella uncharacterized protein lpg0364
c4ct4C_ rna binding protein Chain: C: ccr4-not transcription complex subunit 1; cnot1 mif4g domain - ddx6 complex
c4m1lB_ metal binding protein Chain: B: iq domain-containing protein g; complex of iqcg and ca2+-bound cam
c4lvnP_ hydrolase/inhibitor/immune system Chain: P: subtilisin-like serine protease; crystal structure of pfsub1-prodomain-nimp.m7 fab complex
c4p8bA_ transport protein Chain: A: trap-type transporter, periplasmic component; crystal structure of a trap periplasmic solute binding protein from2 ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound3 (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate)


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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