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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Apr 19

Fold library idPDB HeaderMoleculeTitle
c4mx2C_ lyase Chain: C: adenylosuccinate lyase; crystal structure of adenylosuccinate lyase from leishmania donovani
c4n0hA_ ligase Chain: A: glutamyl-trna(gln) amidotransferase subunit a, crystal structure of s. cerevisiae mitochondrial gatfab
c2m8sB_ chaperone/membrane protein Chain: B: proheparin-binding egf-like growth factor; nmr structure of the cytoplasmic tail of the membrane form of heparin-2 binding egf-like growth factor (prohb-egf-ct) complexed with the3 ubiquitin homology domain of bcl-2-associated athanogene 1 from mus4 musculus (mbag-1-ubh)
c4pzkA_ transferase Chain: A: trna (cytidine(34)-2'-o)-methyltransferase; crystal strucrure of putative rna methyltransferase from bacillus2 anthracis.
c3w66A_ metal transport Chain: A: magnetosome protein mamm; mamm-ctd d249a and h285a
c4oogA_ hydrolase/rna Chain: A: ribonuclease 3; crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
c4bgvB_ oxidoreductase Chain: B: malate dehydrogenase; 1.8 a resolution structure of the malate dehydrogenase from2 picrophilus torridus in its apo form
c4n0hF_ ligase Chain: F: glutamyl-trna(gln) amidotransferase subunit f, crystal structure of s. cerevisiae mitochondrial gatfab
c4bheI_ transferase Chain: I: serine hydroxymethyltransferase; methanococcus jannaschii serine hydroxymethyl-transferase2 in complex with plp
c4pzlC_ transferase Chain: C: adenylate kinase; the crystal structure of adenylate kinase from francisella tularensis2 subsp. tularensis schu s4
c4n0iB_ ligase Chain: B: glutamyl-trna(gln) amidotransferase subunit b, crystal structure of s. cerevisiae mitochondrial gatfab in complex2 with glutamine
c4o64C_ metal binding protein Chain: C: lysine-specific demethylase 2b; zinc fingers of kdm2b
c4chkG_ transcription Chain: G: auxin response factor 5; crystal structure of the arf5 oligomerization domain
c4pupB_ unknown function Chain: B: uncharacterized protein; 2.75 angstrom resolution crystal structure of uncharacterized protein2 from burkholderia cenocepacia j2315
c4irfA_ chaperone Chain: A: malarial clpb2 atpase/hsp101 protein; preliminary structural investigations of a malarial protein secretion2 system
c4o06A_ chaperone Chain: A: probable 26s proteasome regulatory subunit p27; 1.15a resolution structure of the proteasome assembly chaperone nas22 pdz domain
c4owtC_ dna binding protein Chain: C: soss complex subunit c; structural basis of soss1 complex assembly
c4owxB_ dna binding protein/dna Chain: B: soss complex subunit b1; structural basis of soss1 in complex with a 12nt ssdna
c4p3fA_ rna binding protein Chain: A: signal recognition particle subunit srp68; structure of the human srp68-rbd
c4otmB_ transferase Chain: B: serine/threonine-protein kinase gcn2; crystal structure of the c-terminal domain from yeast gcn2
c4nefB_ membrane protein Chain: B: aquaporin-2; x-ray structure of human aquaporin 2
c4nu3A_ antifreeze protein Chain: A: ice-binding protein; crystal structure of mffibp, a capping head region swapped mutant of2 ice-binding protein
c4omzG_ transcription Chain: G: nolr; crystal structure of nolr from sinorhizobium fredii
c4lmhC_ electron transport Chain: C: extracelllular iron oxide respiratory system surface crystal structure of the outer membrane decaheme cytochrome omca
c4n75A_ membrane protein Chain: A: outer membrane protein assembly factor bama; structural basis of bama-mediate outer membrane protein biogenesis
c4otnB_ transferase Chain: B: eukaryotic translation initiation factor 2-alpha kinase 4; crystal structure of the c-terminal regulatory domain of murine gcn2
c4n5iX_ hydrolase Chain: X: esterase/lipase; crystal structure of a c8-c4 sn3 inhibited esterase b from2 lactobacillus rhamnosis
c4l2wB_ protein binding Chain: B: rho-associated protein kinase 1; crystal structure of the shroom-binding domain of human rock1
c4p3gC_ rna binding protein Chain: C: signal recognition particle subunit srp68; structure of the srp68-rbd from chaetomium thermophilum
c4ci8B_ structural protein Chain: B: echinoderm microtubule-associated protein-like 1; crystal structure of the tandem atypical beta-propeller2 domain of eml1
c4owtB_ dna binding protein Chain: B: soss complex subunit b1; structural basis of soss1 complex assembly
c4oxxA_ electron transport Chain: A: cindoxin; crystal structure of cindoxin, surface entropy reduction mutant
c4oogC_ hydrolase/rna Chain: C: ribonuclease 3; crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
c4owtA_ dna binding protein Chain: A: integrator complex subunit 3; structural basis of soss1 complex assembly
c4jleA_ protein binding Chain: A: phist; structure of a p. falciparum protein
c4msxA_ splicing Chain: A: pre-mrna-splicing factor sad1; crystal structure of an essential yeast splicing factor
c4pyzA_ hydrolase Chain: A: ubiquitin carboxyl-terminal hydrolase 7; crystal structure of the first two ubl domains of deubiquitylase usp7
c2m73A_ calmodulin-binding protein Chain: A: calcium-transporting atpase 8, plasma membrane-type; solution structure of the calmodulin-binding domain of plant calcium-2 atpase aca8
c4lg9A_ unknown function Chain: A: f-box-like/wd repeat-containing protein tbl1xr1; crystal structure of tbl1xr1 wd40 repeats
c4p98A_ transport protein Chain: A: extracellular solute-binding protein; abc transporter system solute-bindng protein from conexibacter woesei2 dsm 14684
c2m70A_ protein binding Chain: A: poly(a)-binding protein 1; structural determination of the citrus sinensis poly(a)-binding2 protein cspabp1
c2rt3A_ rna binding protein Chain: A: negative regulator of differentiation 1; solution structure of the second rrm domain of nrd1
c4pwyA_ transferase Chain: A: calmodulin-lysine n-methyltransferase; crystal structure of a calmodulin-lysine n-methyltransferase fragment
c2mh2A_ dna binding protein Chain: A: homologous-pairing protein 2 homolog; structural insights into the dna recognition and protein interaction2 domains reveal fundamental homologous dna pairing properties of hop2
c4cmnA_ hydrolase Chain: A: inositol polyphosphate 5-phosphatase ocrl-1; crystal structure of ocrl in complex with a phosphate ion
c4owwC_ dna binding protein Chain: C: soss complex subunit c; structural basis of soss1 in complex with a 35nt ssdna
c4csbA_ unknown-function Chain: A: virulence associated protein vapd; structure of the virulence-associated protein vapd from the2 intracellular pathogen rhodococcus equi.
c2lzuA_ metal binding protein Chain: A: lim domain-containing protein 2; solution structure of limd2


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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