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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Feb 22

Fold library idPDB HeaderMoleculeTitle
c4ofpC_ cell adhesion Chain: C: protein syg-2; crystal structure of syg-2 d3-d4
c4cmxB_ nuclear protein Chain: B: rv3378c; crystal structure of rv3378c
c4of7B_ cell adhesion Chain: B: protein syg-1, isoform b; crystal structure of syg-1 d1, crystal form 2
c4opmB_ hydrolase Chain: B: lipase; crystal structure of a putative lipase (lip1) from acinetobacter2 baumannii aye at 1.70 a resolution
c4oe4A_ oxidoreductase Chain: A: delta-1-pyrroline-5-carboxylate dehydrogenase, crystal structure of yeast aldh4a1 complexed with nad+
c4bqeA_ transferase Chain: A: alpha-glucan phosphorylase 2,4-glucan phosphorylase; arabidopsis thaliana cytosolic alpha-1,4-glucan phosphorylase (phs2)
c4ofiG_ cell adhesion Chain: G: kin of irre, isoform a; crystal structure of duf (kirre) d1
c4bplB_ transport protein Chain: B: nucleoplasmin nls; rice importin_alpha in complex with nucleoplasmin nls
c4o6cB_ viral protein Chain: B: ns1; west nile virus non-structural protein 1 (ns1) form 2 crystal
c4ofdB_ cell adhesion Chain: B: kin of irre-like protein 1; crystal structure of mouse neph1 d1-d2
c4nwzA_ oxidoreductase Chain: A: fad-dependent pyridine nucleotide-disulfide oxidoreductase; structure of bacterial type ii nadh dehydrogenase from2 caldalkalibacillus thermarum at 2.5a resolution
c4ofyD_ cell adhesion Chain: D: protein syg-2; crystal structure of the complex of syg-1 d1-d2 and syg-2 d1-d4
c4lwoG_ transferase Chain: G: arginine n-methyltransferase, putative; crystal structure of prmt6
c4opeD_ ligase, transferase Chain: D: nrps/pks; beta-ketoacyl synthase domain (4221-4804) of polyketide synthase from2 streptomyces albus
c4ntxC_ transport protein/toxin Chain: C: basic phospholipase a2 homolog tx-beta; structure of acid-sensing ion channel in complex with snake toxin and2 amiloride
c4bz4D_ copper-binding protein Chain: D: copper-repressible polypeptide; cora is a surface-associated copper-binding protein2 important in methylomicrobium album bg8 copper acquisition
c4o6bA_ viral protein Chain: A: non-structural protein 1; dengue type2 virus non-structural protein 1 (ns1) form 1 crystal
c4leaA_ sugar binding protein Chain: A: pyocin l1; the crystal structure of pyocin l1 bound to d-mannose at 2.552 angstroms
c4ntwB_ transport protein/toxin Chain: B: neurotoxin mittx-alpha; structure of acid-sensing ion channel in complex with snake toxin
c4of0A_ cell adhesion Chain: A: protein syg-1, isoform b; crystal structure of syg-1 d1-d2, refolded
c4oleD_ structural genomics, unknown function Chain: D: next to brca1 gene 1 protein; crystal structure of a neighbor of brca1 gene 1 (nbr1) from homo2 sapiens at 2.52 a resolution
c4kfcB_ transcription regulator/dna Chain: B: kdp operon transcriptional regulatory protein kdpe; crystal structure of a hyperactive mutant of response regulator kdpe2 complexed to its promoter dna
c4of8D_ cell adhesion Chain: D: irregular chiasm c-roughest protein; crystal structure of rst d1-d2
c4nw4A_ structural genomics, unknown function Chain: A: lipoprotein s-layer protein; crystal structure of a hypothetical protein (ef0375) from enterococcus2 faecalis v583 at 1.85 a resolution
c4o5hD_ oxidoreductase Chain: D: phenylacetaldehyde dehydrogenase; x-ray crystal structure of a putative phenylacetaldehyde dehydrogenase2 from burkholderia cenocepacia
c4mcwA_ hydrolase Chain: A: metal dependent phosphohydrolase; metallo-enzyme from p. marina
c3wisA_ oxidoreductase Chain: A: putative dihydromethanopterin reductase (afpa); crystal structure of burkholderia xenovorans dmrb in complex with fmn:2 a cubic protein cage for redox transfer
c4na3A_ transferase Chain: A: polyketide synthase pksj; crystal structure of the second ketosynthase from the bacillaene2 polyketide synthase bound to a hexanoyl substrate mimic
c4c0bC_ transcription Chain: C: pcf11p; structure of wild-type clp1p-pcf11p (454-563) complex
c3w94B_ hydrolase Chain: B: enteropeptidase-1; structure of oryzias latipes enteropeptidase light chain
c4opfA_ ligase, transferase Chain: A: nrps/pks; beta-ketoacyl synthase domain (6118-6552) of polyketide synthase from2 streptomyces albus
c4iv0B_ transferase Chain: B: phosphoethanolamine n-methyltransferase, putative; crystal structure of n-methyl transferase from plasmodium vivax2 complexed with s-adenosyl methionine and phosphate
c4ccvA_ blood clotting Chain: A: histidine-rich glycoprotein; crystal structure of histidine-rich glycoprotein n2 domain2 reveals redox activity at an interdomain disulfide bridge:3 implications for the regulation of angiogenesis
c4nn1A_ transcription Chain: A: transcriptional regulator; crystal structure of transcriptional regulator rv1219c of2 mycobacterium tuberculosis
c4nzrM_ immune system/protein binding Chain: M: protein m td; crystal structure of the antibody-binding region of protein m (protein2 m td) in complex with anti-hiv antibody pgt135 fab
c4m6bC_ structural protein/hydrolase Chain: C: helicase swr1; crystal structure of yeast swr1-z domain in complex with h2a.z-h2b2 dimer
c4c0hD_ transcription Chain: D: pcf11p; extended interface between pcf11p and clp1p and structural2 basis for atp loss in gly135arg point mutant
c4nsxA_ protein binding Chain: A: u3 small nucleolar rna-associated protein 21; crystal structure of the utp21 tandem wd domain
c4m6bF_ structural protein/hydrolase Chain: F: helicase swr1; crystal structure of yeast swr1-z domain in complex with h2a.z-h2b2 dimer
c4njlA_ viral protein Chain: A: s protein; crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
c4c0hC_ transcription Chain: C: pcf11p; extended interface between pcf11p and clp1p and structural2 basis for atp loss in gly135arg point mutant


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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