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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Feb 01

Fold library idPDB HeaderMoleculeTitle
c4fdtB_ hydrolase Chain: B: putative multiple inositol polyphosphate histidine crystal structure of a multiple inositol polyphosphate phosphatase
c4m6rA_ lyase Chain: A: methylthioribulose-1-phosphate dehydratase; structural and biochemical basis for the inhibition of cell death by2 apip, a methionine salvage enzyme
c4mc8A_ lyase Chain: A: putative sesquiterpene cyclase; hedycaryol synthase in complex with hepes
c4c3oC_ oxidoreductase Chain: C: hydrogenase-1 large subunit; structure and function of an oxygen tolerant nife2 hydrogenase from salmonella
c4nx9A_ structural protein Chain: A: flagellin; crystal structure of pseudomonas aeruginosa flagellin flic
c4caiB_ membrane protein Chain: B: dysferlin; structure of inner dysf domain of human dysferlin
c3w3fB_ biosynthetic protein Chain: B: uncharacterized protein blr2150; crystal structure of ent-kaurene synthase bjks from bradyrhizobium2 japonicum
c2m3xE_ unknown function Chain: E: ph1500; solution structure of ph1500: a homohexameric protein centered on a2 12-bladed beta-propeller
c4mmiA_ lyase Chain: A: heparinase iii protein; crystal structure of heparan sulfate lyase hepc mutant from pedobacter2 heparinus
c4izhA_ oxidoreductase Chain: A: nad/nadp transhydrogenase alpha subunit 1; crystal structure of the alpha1 dimer of thermus thermophilus2 transhydrogenase in p6
c4ixaA_ transcription Chain: A: response regulator saer; structure of dna-binding domain of the response regulator saer from2 staphylococcus epidermidis
c4iwmD_ unknown function Chain: D: upf0135 protein mj0927; crystal structure of the conserved hypothetical protein mj0927 from2 methanocaldococcus jannaschii (in p21 form)
c4mi8D_ viral protein/apoptosis Chain: D: beclin-1; crystal structure of the complex of murine gamma-herpesvirus 68 bcl-22 homolog m11 and a beclin 1 bh3 domain-derived peptide
c4ok2A_ lyase Chain: A: putative alginate lyase; crystal structure of alg17c mutant y258a
c3zj3S_ toxin/cell adhesion Chain: S: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c3zj3T_ toxin/cell adhesion Chain: T: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c4ivvA_ hydrolase Chain: A: autolysin; catalytic amidase domain of the major autolysin lyta from2 streptococcus pneumaniae
c2mj7A_ transport protein Chain: A: ap-4 complex subunit beta-1; solution nmr structure of beta-adaptin appendage domain of human2 adaptor protein complex 4 subunit beta, northeast structural genomics3 consortium (nesg) target hr8998c
c4npjA_ membrane protein Chain: A: extended synaptotagmin-2; extended-synaptotagmin 2, c2a- and c2b-domains
c4lrzG_ transferase/transcription regulator Chain: G: pts-dependent dihydroxyacetone kinase operon regulatory crystal structure of the e.coli dhar(n)-dhal complex
c3zk0A_ chaperone Chain: A: sco3965; the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
c3zk4A_ oxidoreductase Chain: A: diphosphonucleotide phosphatase 1; structure of purple acid phosphatase ppd1 isolated from2 yellow lupin (lupinus luteus) seeds
c4mupC_ hydrolase Chain: C: amidohydrolase; crystal structure of agrobacterium tumefaciens atu3138 (efi target2 505157), apo structure
c2mi6A_ transcription Chain: A: transcription termination/antitermination protein nusg; solution structure of the carboxy terminal domain of nusg from2 mycobacterium tuberculosis
c3w5gB_ hydrolase Chain: B: beta-galactosidase; crystal structure of tomato beta-galactosidase 4 in complex with2 galactose
c4iw3J_ metal binding protein/translation Chain: J: putative uncharacterized protein; crystal structure of a pseudomonas putida prolyl-4-hydroxylase (p4h)2 in complex with elongation factor tu (ef-tu)
c4myzC_ protein binding Chain: C: curk, curl fusion protein; structure of a class 2 docking domain complex from modules curk and2 curl of the curacin a polyketide synthase
c4lykB_ hydrolase Chain: B: cyclic di-gmp phosphodiesterase yaha; crystal structure of the eal domain of c-di-gmp specific2 phosphodiesterase yaha in complex with activating cofactor mg++
c3zj35_ toxin/cell adhesion Chain: 5: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c4bwbB_ signaling protein Chain: B: neurotensin receptor type 1; structure of evolved agonist-bound neurotensin receptor 12 mutant without lysozyme fusion
c4l79A_ motor protein/metal binding protein Chain: A: unconventional myosin-ib; crystal structure of nucleotide-free myosin 1b residues 1-728 with2 bound calmodulin
c3zj3Q_ toxin/cell adhesion Chain: Q: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c4n5qA_ protein binding Chain: A: transient receptor potential cation channel subfamily v crystal structure of the n-terminal ankyrin repeat domain of trpv3
c4lxjA_ oxidoreductase Chain: A: lanosterol 14-alpha demethylase; saccharomyces cerevisiae lanosterol 14-alpha demethylase with2 lanosterol bound
c4it7C_ hydrolase inhibitor Chain: C: cpi; crystal structure of al-cpi
c4iqlB_ oxidoreductase Chain: B: enoyl-(acyl-carrier-protein) reductase ii; crystal structure of porphyromonas gingivalis enoyl-acp reductase ii2 (fabk) with cofactors nadph and fmn
c3zj34_ toxin/cell adhesion Chain: 4: claudin-2; PDB Fragment:ecl2, residues 141-160;
c4og1A_ lyase Chain: A: enoyl-coa hydratase/isomerase; crystal structure of a putative enoyl-coa hydratase from2 novosphingobium aromaticivorans dsm 12444
c3zj33_ toxin/cell adhesion Chain: 3: claudin-2; PDB Fragment:residues 38-319;
c4mi8C_ viral protein/apoptosis Chain: C: beclin-1; crystal structure of the complex of murine gamma-herpesvirus 68 bcl-22 homolog m11 and a beclin 1 bh3 domain-derived peptide
c3zj3V_ toxin/cell adhesion Chain: V: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c4myyA_ protein binding Chain: A: curg, curh fusion protein; structure of a class 2 docking domain complex from modules curg and2 curh of the curacin a polyketide synthase
c4nmnA_ replication Chain: A: replicative dna helicase; aquifex aeolicus replicative helicase (dnab) complexed with adp, at2 3.3 resolution
c4itkA_ electron transport Chain: A: apoferredoxin; the structure of c.reinhardtii ferredoxin 2
c2miqA_ oxidoreductase Chain: A: lysine-specific demethylase lid; solution nmr structure of phd type 1 zinc finger domain 1 of lysine-2 specific demethylase lid from drosophila melanogaster, northeast3 structural genomics consortium (nesg) target fr824j
c3zj32_ toxin/cell adhesion Chain: 2: claudin-2; PDB Fragment:ecl2, residues 141-160;
c3zj3R_ toxin/cell adhesion Chain: R: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c3zj3Z_ toxin/cell adhesion Chain: Z: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c2m45A_ hydrolase Chain: A: minichromosome maintenance protein mcm; nmr solution structure of the c-terminus of the minichromosome2 maintenance protein mcm from sulfolobus solfataricus
c3zj3U_ toxin/cell adhesion Chain: U: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c3zj3X_ toxin/cell adhesion Chain: X: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c4bvuA_ transferase/ligase/protein binding Chain: A: protein kinase ospg; structure of shigella effector ospg in complex with host2 ubch5c-ubiquitin conjugate
c4mz0B_ transferase Chain: B: curl; structure of a ketosynthase-acyltransferase di-domain from module curl2 of the curacin a polyketide synthase
c4ifsA_ transcription, replication Chain: A: fact complex subunit ssrp1; crystal structure of the hssrp1 middle domain
c3zj3P_ toxin/cell adhesion Chain: P: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c3zj3Y_ toxin/cell adhesion Chain: Y: claudin-2; structure of clostridium perfringens enterotoxin with a peptide2 derived from a modified version of ecl-2 of claudin 2
c2m3eA_ membrane protein Chain: A: integrin alpha-l; the integrin alpha l transmembrane domain in bicelles: structure and2 interaction with integrin beta 2
c3zj31_ toxin/cell adhesion Chain: 1: claudin-2; PDB Fragment:residues 38-319;


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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