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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Dec 07

Fold library idPDB HeaderMoleculeTitle
c4mbyB_ viral protein Chain: B: major capsid protein vp1; structure of b-lymphotropic polyomavirus vp1 in complex with 3'-2 sialyllactose
c4i7vD_ biosynthetic protein Chain: D: dihydrodipicolinate synthase; agrobacterium tumefaciens dhdps with pyruvate
c4n30A_ oxidoreductase Chain: A: protein disulfide isomerase; crystal structure of pseudomonas aeruginosa dsba2
c2ltrA_ rna binding protein Chain: A: protein rde-4; solution structure of rde-4(32-136)
c3j5pB_ transport protein Chain: B: transient receptor potential cation channel subfamily v structure of trpv1 ion channel determined by single particle electron2 cryo-microscopy
c4nbtA_ oxidoreductase Chain: A: 3-oxoacyl-[acyl-carrier-protein] reductase; crystal structure of fabg from acholeplasma laidlawii
c4nbvA_ oxidoreductase Chain: A: 3-oxoacyl-[acyl-carrier-protein] reductase putative short- crystal structure of fabg from cupriavidus taiwanensis
c4c2dC_ hydrolase/peptide Chain: C: carboxy-terminal processing protease ctpb; crystal structure of the protease ctpb in an active state
c3zpjA_ unknown function Chain: A: ton_1535; crystal structure of ton1535 from thermococcus onnurineus na1
c4l7zC_ lyase Chain: C: hpch/hpai aldolase; crystal structure of chloroflexus aurantiacus malyl-coa lyase
c4l9zA_ lyase Chain: A: malyl-coa lyase; crystal structure of rhodobacter sphaeroides malyl-coa lyase in2 complex with magnesium, oxalate, and coa
c4nozA_ protein binding Chain: A: organic hydroperoxide resistance protein; crystal structure of an organic hydroperoxide resistance protein from2 burkholderia cenocepacia
c4bqdC_ blood clotting Chain: C: peptide; kd1 of human tfpi in complex with a synthetic peptide
c4maaA_ transport protein Chain: A: putative branched-chain amino acid abc transporter, the crystal structure of amino acid abc transporter substrate-binding2 protein from pseudomonas fluorescens pf-5
c4nbwA_ oxidoreductase Chain: A: short-chain dehydrogenase/reductase sdr; crystal structure of fabg from plesiocystis pacifica
c4nohA_ lipid binding protein Chain: A: lipoprotein, putative; 1.5 angstrom crystal structure of putative lipoprotein from bacillus2 anthracis.
c4ip4B_ isomerase Chain: B: mandelate racemase/muconate lactonizing enzyme-like crystal structure of l-fuconate dehydratase from silicibacter sp.2 tm1040 liganded with mg
c4mn8C_ transferase/transferase receptor Chain: C: flg22; crystal structure of flg22 in complex with the fls2 and bak12 ectodomains
c4i8bA_ oxidoreductase Chain: A: thioredoxin; crystal structure of thioredoxin from schistosoma japonicum
c2mbgA_ protein binding Chain: A: rala-binding protein 1; rlip76 (gap-gbd)
c4nbuD_ oxidoreductase Chain: D: 3-oxoacyl-(acyl-carrier-protein) reductase; crystal structure of fabg from bacillus sp
c4n1dA_ cytokine, signaling protein Chain: A: nodal/bmp2 chimera protein; nodal/bmp2 chimera nb250
c2mc4A_ unknown function Chain: A: dna binding protein; the solution structure of the c-terminal domain of bldd from2 streptomyces coelicolor
c4bqdA_ blood clotting Chain: A: tissue factor pathway inhibitor (lipoprotein-associated kd1 of human tfpi in complex with a synthetic peptide
c4bv4R_ immune system Chain: R: protein toll, variable lymphocyte receptor b chimera; structure and allostery in toll-spatzle recognition
c4nmlA_ isomerase Chain: A: ribulose 5-phosphate isomerase; 2.60 angstrom resolution crystal structure of putative ribose 5-2 phosphate isomerase from toxoplasma gondii me49 in complex with dl-3 malic acid
c4i97A_ transferase Chain: A: delta class 1 glutathione s-transferase; the crystal structure of glutathione s-transferase sniggstd1a from2 scaptomyza nigrita in complex with glutathione
c4mkmA_ unknown function Chain: A: putative surface anchored protein; repeat domains 1 & 2 of clostridium perfringens cpe0147
c4iobA_ lyase Chain: A: diguanylate cyclase tpbb; crystal structure of the ggdef domain of pa1120 (yfin or tpbb) from2 pseudomonas aeruginosa at 2.7 ang.
c4nogB_ transferase Chain: B: putative ornithine aminotransferase, mitochondrial; crystal structure of a putative ornithine aminotransferase from2 toxoplasma gondii me49 in complex with pyrodoxal-5'-phosphate
c4mz3A_ membrane protein Chain: A: sodium channel subunit beta-4; crystal structure of the voltage-gated sodium channel beta 4 subunit2 extracellular domain, c131w mutant
c4noiA_ transferase Chain: A: dna-directed rna polymerase subunit alpha; 2.17 angstrom crystal structure of dna-directed rna polymerase subunit2 alpha from campylobacter jejuni.
c4mn8A_ transferase/transferase receptor Chain: A: lrr receptor-like serine/threonine-protein kinase fls2; crystal structure of flg22 in complex with the fls2 and bak12 ectodomains
c4mnaA_ transferase Chain: A: lrr receptor-like serine/threonine-protein kinase fls2; crystal structure of the free fls2 ectodomains
c4nofB_ immune system Chain: B: polymeric immunoglobulin receptor; crystal structure of the second ig domain from mouse polymeric2 immunoglobulin receptor [psi-nysgrc-006220]
c2m1hA_ transcription Chain: A: transcription elongation factor s-ii; solution structure of a pwwp domain from trypanosoma brucei
c4bqdD_ blood clotting Chain: D: peptide; kd1 of human tfpi in complex with a synthetic peptide
c2mhdA_ structural genomics, unknown function Chain: A: uncharacterized protein; nmr structure of the hypothetical protein bacuni_03114 from2 bacteroides uniformis atcc 8492
c4nguA_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio alaskensis g20 (dde_1548), target efi-510103, with3 bound d-ala-d-ala
c2ltsA_ rna binding protein Chain: A: protein rde-4; solution structure of rde-4(150-235)
c4nmyA_ transport protein Chain: A: abc-type transport system, extracellular solute-binding crystal structure of the thiamin-bound form of substrate-binding2 protein of abc transporter from clostridium difficile
c2rsvA_ transferase Chain: A: serine/threonine-protein kinase vrk1; solution structure of human full-length vaccinia related kinase 12 (vrk1)
c4nn3A_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens (desal_2161), target efi-510109, with bound3 orotic acid
c4l37A_ protein binding Chain: A: silkworm storage protein; sp2-sp3 - a complex of two storage proteins from bombyx mori hemolymph


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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