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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Sep 14

Fold library idPDB HeaderMoleculeTitle
c4by7X_ transcription Chain: X: transcription factor bye1; elongating rna polymerase ii-bye1 tld complex
c4j72B_ transferase Chain: B: phospho-n-acetylmuramoyl-pentapeptide-transferase; crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
c4gydA_ electron transport Chain: A: cytochrome c6; nostoc sp cytochrome c6
c4b9pA_ carbohydrate-binding protein Chain: A: type 3a cellulose-binding domain protein; biomass sensoring module from putative rsgi2 protein of2 clostridium thermocellum resemble family 3 carbohydrate-3 binding module of cellulosome
c4jenB_ hydrolase Chain: B: cmp n-glycosidase; structure of clostridium botulinum cmp n-glycosidase, bcmb
c4gitA_ hydrolase Chain: A: lon protease; crystal structure of alpha sub-domain of lon protease from2 brevibacillus thermoruber
c4gn0D_ signaling protein Chain: D: hamp domain of af1503; de novo phasing of a hamp-complex using an improved arcimboldo method
c3zl8A_ ligase Chain: A: udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine crystal structure of murf ligase from thermotoga maritima2 in complex with adp
c4ky0B_ transport protein, membrane protein Chain: B: proton/glutamate symporter, sdf family; crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
c4gu7C_ oxidoreductase Chain: C: putative uncharacterized protein sco7193; crystal structure of dyp-type peroxidase (sco7193) from streptomyces2 coelicolor
c4kptA_ transport protein Chain: A: glutamine abc transporter permease and substrate binding crystal structure of substrate binding domain 1 (sbd1) of abc2 transporter glnpq from lactococcus lactis
c4kr5B_ transport protein Chain: B: glutamine abc transporter permease and substrate binding crystal structure of lactococcus lactis glnp substrate binding domain2 2 (sbd2) in open conformation
c4jgwB_ signaling protein Chain: B: ral guanine nucleotide dissociation stimulator-like 2; the conformation of a docking site for sh3 domains is pre-selected in2 the guanine nucleotide exchange factor rlf
c4gdoC_ structural protein Chain: C: plectin; structure of a fragment of the rod domain of plectin
c4hk6D_ lyase Chain: D: uracil-5-carboxylate decarboxylase; crystal structure of cordyceps militaris idcase in complex with 5-2 nitro-uracil
c4m4eB_ signaling protein Chain: B: tnf receptor-associated factor 4; traf domain of human traf4
c4hobC_ dna binding protein Chain: C: putative uncharacterized protein; the crystal structure of the zalpha domain from cyprinid herpes virus2 3
c2m1aA_ viral protein Chain: A: hiv-1 rev arginine-rich motif (arm); hiv-1 rev arm peptide (residues t34-r50)
c4j8zB_ protein binding Chain: B: speckle-type poz protein; crystal structure of the human spop btb domain
c4bg7A_ replication Chain: A: putative transcriptional coactivator p15; bacteriophage t5 homolog of the eukaryotic transcription coactivator2 pc4 implicated in recombination-dependent dna replication
c4le3B_ hydrolase Chain: B: beta-glucanase; crystal structure of a gh131 beta-glucanase catalytic domain from2 podospora anserina
c4gt2A_ oxidoreductase Chain: A: putative uncharacterized protein sco3963; crystal structure of dyp-type peroxidase (sco3963) from streptomyces2 coelicolor
c4bwdA_ structural protein Chain: A: short coiled-coil protein; human short coiled coil protein
c4b97A_ sugar binding protein Chain: A: cellulose binding domain-containing protein; biomass sensing modules from putative rsgi-like proteins2 of clostridium thermocellum resemble family 3 carbohydrate-3 binding module of cellulosome
c4c1aA_ hydrolase Chain: A: orf1-encoded protein; coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
c4bt7A_ lyase Chain: A: alpha-acetolactate decarboxylase; acetolactate decarboxylase with a bound phosphate ion
c4ll9A_ immune system Chain: A: leukocyte immunoglobulin-like receptor subfamily b member crystal structure of d3d4 domain of the lilrb1 molecule
c4c46B_ transcription Chain: B: general control protein gcn4, general control protein andrei-n-lvpas fused to gcn4 adaptors
c4bifC_ lyase Chain: C: cupin 2 conserved barrel domain protein; biochemical and structural characterisation of a novel2 manganese-dependent hydroxynitrile lyase from bacteria
c4gdoF_ structural protein Chain: F: plectin; structure of a fragment of the rod domain of plectin
c4hsnA_ transferase Chain: A: 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; crystal structure of dah7ps from neisseria meningitidis
c2ly2A_ rna binding protein Chain: A: tudor domain-containing protein 7; nmr structure of the second and third lotus domains of tudor domain-2 containing protein 7 (nmr ensemble overlay for lotus #3)
c4jemA_ hydrolase Chain: A: cmp/hydroxymethyl cmp hydrolase; crystal structure of milb complexed with cytidine 5'-monophosphate
c4je5C_ transferase Chain: C: aromatic/aminoadipate aminotransferase 1; crystal structure of the aromatic aminotransferase aro8, a putative2 alpha-aminoadipate aminotransferase in saccharomyces cerevisiae
c4c1aD_ hydrolase Chain: D: orf1-encoded protein; coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
c4c1aC_ hydrolase Chain: C: orf1-encoded protein; coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
c4b9cA_ carbohydrate-binding protein Chain: A: type 3a cellulose-binding domain protein; biomass sensoring modules from putative rsgi-like proteins2 of clostridium thermocellum resemble family 3 carbohydrate-3 binding module of cellulosome
c2mcsA_ oxidoreductase Chain: A: thioredoxin; solution nmr structure of a putative thioredoxin (ech_0218) in the2 reduced state from ehrlichia chaffeensis, the etiological agent3 responsible for human monocytic ehrlichiosis. seattle structural4 genomics center for infectious disease target ehcha.00546.a
c4c1bC_ hydrolase Chain: C: orf1-encoded protein; esterase domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
c2lwwB_ transcription Chain: B: nuclear transcription factor rela; nmr structure of rela-tad/cbp-taz1 complex
c4mgeB_ transferase Chain: B: pts system, cellobiose-specific iib component; 1.85 angstrom resolution crystal structure of pts system cellobiose-2 specific transporter subunit iib from bacillus anthracis.
c3zj1A_ rna binding protein Chain: A: nuclear polyadenylated rna-binding protein nab2; structure of nab2p tandem zinc finger 12
c4c1aB_ hydrolase Chain: B: orf1-encoded protein; coiled coil domain of the zfl2-1 orf1 protein from the2 zebrafish zfl2-1 retrotransposon
c4jo0A_ oxidoreductase Chain: A: cmla; crystal structure of cmla, a diiron beta-hydroxylase from streptomyces2 venezuelae
c4gs1A_ oxidoreductase Chain: A: dyp-type peroxidase; crystal structure of dyp-type peroxidase from thermobifida2 cellulosilytica
c4lvpA_ transport protein Chain: A: intraflagellar transport protein 81; crystal structure of ift81 n-terminal domain
c4kjzD_ translation Chain: D: translation initiation factor if-2; crystal structure of thermus thermophilus if2, apo and gdp-bound forms2 (2-474)
c2lzfA_ protein binding Chain: A: uncharacterized protein ykzf; structure of the biofilm matrix promoter abba from b. subtilis
c3zj2A_ rna binding protein Chain: A: nuclear polyadenylated rna-binding protein nab2; structure of nab2p tandem zinc finger 34
c2m76A_ signaling protein Chain: A: carnitine o-palmitoyltransferase 1, brain isoform; structure of the regulatory domain of human brain carnitine2 palmitoyltransferase 1
c4mh6A_ unknown function Chain: A: putative type iii secretion protein ysco; 2.8 angstrom crystal structure of type iii secretion protein ysco from2 vibrio parahaemolyticus
c4lowA_ unknown function Chain: A: pdl; 1.3 a structure of pdl, a defining member of the alpha-carboxysome2 operon, from t. intermedia k12
c4me8A_ hydrolase Chain: A: signal peptidase i; crystal structure of a signal peptidase i (ef3073) from enterococcus2 faecalis v583 at 2.27 a resolution
c4j72A_ transferase Chain: A: phospho-n-acetylmuramoyl-pentapeptide-transferase; crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
c2mbfA_ transcription Chain: A: fork head domain containing protein; solution structure of the forkhead domain of brugia malayi daf-16a
c4mbsB_ signaling protein Chain: B: chimera protein of c-c chemokine receptor type 5 and crystal structure of the ccr5 chemokine receptor
c4lswA_ hydrolase Chain: A: d-2-hydroxyacid dehydrogensase protein; crystallization and structural analysis of 2-hydroxyacid dehydrogenase2 from ketogulonicigenium vulgare y25
c4c3sA_ oxidoreductase Chain: A: aldehyde dehydrogenase; structure of a propionaldehyde dehydrogenase from the2 clostridium phytofermentans fucose utilisation bacterial3 microcompartment


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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