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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Sep 07

Fold library idPDB HeaderMoleculeTitle
c4l16A_ hydrolase Chain: A: fidgetin-like protein 1; crystal structure of figl-1 aaa domain in complex with adp
c4mcjC_ transferase Chain: C: uncharacterized protein; crystal structure of a hypothetical protein (bdi_0649) from2 parabacteroides distasonis atcc 8503 at 2.40 a resolution
c4go4E_ oxidoreductase Chain: E: putative gamma-hydroxymuconic semialdehyde dehydrogenase; crystal structure of pnpe in complex with nicotinamide adenine2 dinucleotide
c4mf4F_ lyase Chain: F: hpch/hpai aldolase/citrate lyase family protein; crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
c4kssC_ protein transport Chain: C: type ii secretion system protein e, hemolysin-coregulated crystal structure of vibrio cholerae atpase gspse hexamer
c3wd8D_ transferase Chain: D: type iii polyketide synthase quinolone synthase; typeiii polyketide synthases
c4igyB_ allergen Chain: B: kirola; crystal structure of kirola (act d 11) - triclinic form
c4ha7B_ oxidoreductase Chain: B: 2,5-diamino-6-ribosylamino-4(3h)-pyrimidinone 5'-phosphate structural insights into the reduction mechanism of saccharomyces2 cerevisia riboflavin biosynthesis reductase rib7
c4jw0A_ structural protein Chain: A: carbon dioxide concentrating mechanism protein; structure of gloeobacter violaceus ccml
c4k48A_ ligase Chain: A: leucine--trna ligase; structure of the streptococcus pneumoniae leucyl-trna synthetase2 editing domain
c4b8nC_ electron transport Chain: C: cytochrome b5-host origin; cytochrome b5 of ostreococcus tauri virus 2
c4b8eA_ ligase Chain: A: e3 ubiquitin/isg15 ligase trim25; pry-spry domain of trim25
c4grcA_ oxidoreductase Chain: A: putative membrane protein; crystal structure of dyp-type peroxidase (sco2276) from streptomyces2 coelicolor
c3wevA_ oxidoreductase Chain: A: l-lysine 6-oxidase; crystal structure of the schiff base intermediate of l-lys epsilon-2 oxidase from marinomonas mediterranea with l-lys
c4lsxB_ steroid binding protein/protein binding Chain: B: protein brassinosteroid insensitive 1; plant steroid receptor ectodomain bound to brassinolide and serk1 co-2 receptor ectodomain
c2m6iC_ membrane protein Chain: C: full-length transmembrane domains of human glycine receptor putative pentameric open-channel structure of full-length2 transmembrane domains of human glycine receptor alpha1 subunit
c4jf7B_ viral protein Chain: B: hemagglutinin-neuraminidase; structure of the parainfluenza virus 5 (piv5) hemagglutinin-2 neuraminidase (hn) ectodomain
c4l01B_ transferase Chain: B: tyrosine-protein kinase jak1; crystal structure of the v658f apo jak1 pseudokinase domain
c4k81C_ signaling protein Chain: C: growth factor receptor-bound protein 14; crystal structure of the grb14 ra and ph domains in complex with gtp-2 loaded h-ras
c4mdcB_ transferase Chain: B: putative glutathione s-transferase; crystal structure of glutathione s-transferase from sinorhizobium2 meliloti 1021, nysgrc target 021389
c4lrtC_ lyase/oxidoreductase Chain: C: 4-hydroxy-2-oxovalerate aldolase; crystal and solution structures of the bifunctional enzyme2 (aldolase/aldehyde dehydrogenase) from thermomonospora curvata,3 reveal a cofactor-binding domain motion during nad+ and coa4 accommodation whithin the shared cofactor-binding site
c2m89A_ structural genomics, unknown function Chain: A: aha1 domain protein; solution structure of the aha1 dimer from colwellia psychrerythraea
c4g07A_ oxidoreductase Chain: A: histidinol dehydrogenase; the crystal structure of the c366s mutant of hdh from brucella suis
c4k3bA_ membrane protein Chain: A: outer membrane protein assembly factor bama; the crystal structure of bama from neisseria gonorrhoeae
c2lw7A_ ligase Chain: A: histidine--trna ligase, cytoplasmic; nmr solution structure of human hisrs splice variant
c4lw8B_ isomerase Chain: B: putative epimerase; crystal structure of a putative epimerase from burkholderia2 cenocepacia j2315
c4mfgA_ transferase Chain: A: putative acyltransferase; 2.0 angstrom resolution crystal structure of putative carbonic2 anhydrase from clostridium difficile.
c3zd0A_ transport protein Chain: A: p7 protein; the solution structure of monomeric hepatitis c virus p72 yields potent inhibitors of virion release
c4lscA_ protein binding Chain: A: somatic embryogenesis receptor kinase 1; isolated serk1 co-receptor ectodomain at high resolution
c4b7vA_ transferase Chain: A: 3-oxoacyl-[acyl-carrier-protein] synthase 2; structure of wild type pseudomonas aeruginosa fabf (kasii)
c4makA_ hydrolase Chain: A: crispr-associated endoribonuclease cas2; crystal structure of a putative ssrna endonuclease cas2, crispr2 adaptation protein from e.coli
c3watA_ transferase Chain: A: 4-o-beta-d-mannosyl-d-glucose phosphorylase; crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp2 complexed with man+glc
c4ikaD_ replication Chain: D: vpg; crystal structure of ev71 3dpol-vpg
c4lqxB_ oxidoreductase Chain: B: tena/thi-4 domain-containing protein; crystal structure of a tena/thi-4 domain-containing protein (sso2700)2 from sulfolobus solfataricus p2 at 2.34 a resolution
c4jvzC_ structural protein Chain: C: carbon dioxide concentrating mechanism protein; structure of thermosynechococcus elongatus ccml
c4fasD_ oxidoreductase Chain: D: ne1300; complex crystal structure of hydroxylamine oxidoreductase and ne13002 from nitrosomonas europaea
c4bszB_ rna binding protein Chain: B: ankyrin repeat-containing protein yar1; protein complex
c4mf7A_ transferase Chain: A: glutathione s-transferase enzyme with thioredoxin-like crystal structure of glutathione transferase bbta-3750 from2 bradyrhizobium sp., target efi-507290
c4mdyA_ transport protein Chain: A: periplasmic binding protein; crystal structure of periplasmic solute binding protein from2 mycobacterium smegmatis str. mc2 155
c4mcoC_ transport protein Chain: C: trap dicarboxylate transporter-dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 rhodoferax ferrireducens (rfer_1840), target efi-510211, with bound3 malonate
c4ld3A_ structural protein, protein binding Chain: A: uncharacterized protein; structural analysis of the microcephaly protein cpap g-box domain2 suggests a role in centriole elongation.
c4jcnA_ hydrolase Chain: A: glutamyl endopeptidase; structure of esp, serine protease from staphylococcus epidermidis
c4l0rA_ cell cycle Chain: A: centrosomal protein of 57 kda; crystal structure of fgf2-interacting protein from homo sapiens.2 northeast structural genomics consortium target hr9027a.
c2ma7A_ dna binding protein Chain: A: zinc finger protein eos; solution nmr structure of zinc finger protein eos from homo sapiens,2 northeast structural genomics consortium (nesg) target hr7992a
c2lxwA_ apoptosis Chain: A: xiap-associated factor 1; the solution structure of xiap(ring)-binding domain of human xaf1
c4k3cA_ membrane protein Chain: A: outer membrane protein assembly factor bama; the crystal structure of bama from haemophilus ducreyi lacking potra2 domains 1-3
c2mcaA_ unknown function Chain: A: uncharacterized protein; nmr structure of the protein yp_002937094.1 from eubacterium rectale
c4kytB_ membrane protein Chain: B: cardiac phospholamban; the structure of superinhibitory phospholamban bound to the calcium2 pump serca1a
c4lc9A_ transferase/transferase regulator Chain: A: glucokinase regulatory protein; structural basis for regulation of human glucokinase by glucokinase2 regulatory protein


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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