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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Aug 17

Fold library idPDB HeaderMoleculeTitle
c4btgB_ virus Chain: B: major inner protein p1; coordinates of the bacteriophage phi6 capsid subunits (p1a and p1b)2 fitted into the cryoem reconstruction of the procapsid at3 4.4 a resolution
c4it4D_ unknown function Chain: D: cg17282; crystal structure of residues 1-211 of cg17282
c4begA_ lipid-binding protein Chain: A: phosphatidylethanolamine binding protein; structure of rv2140c, a phosphatidyl-ethanolamine binding2 protein from mycobacterium tuberculosis in complex with3 sulphate
c4m0kD_ transferase Chain: D: adenine phosphoribosyltransferase; crystal structure of adenine phosphoribosyltransferase from2 rhodothermus marinus dsm 4252, nysgrc target 029775.
c4bz7A_ hydrolase Chain: A: histone deacetylase 8; crystal structure of schistosoma mansoni hdac8 complexed with m344
c4b5cC_ lipid transport Chain: C: putative ompa family lipoprotein; crystal structure of the peptidoglycan-associated2 lipoprotein from burkholderia pseudomallei
c3zbgA_ transferase Chain: A: 3-ketoacyl-coa thiolase-like protein; crystal structure of wild-type scp2 thiolase from leishmania2 mexicana at 1.85 a
c4m1aB_ structural genomics, unknown function Chain: B: hypothetical protein; crystal structure of a domain of unknown function (duf1904) from2 sebaldella termitidis atcc 33386
c4kgkB_ transferase Chain: B: thg1-like uncharacterized protein; bacterial trna(his) guanylyltransferase (thg1)-like protein in complex2 with gtp
c4i6hA_ transferase/transferase inhibitor Chain: A: serine/threonine-protein kinase plk2; selective & brain-permeable polo-like kinase-2 (plk-2) inhibitors that2 reduce alpha-synuclein phosphorylation in rat brain
c4bb7A_ transcription Chain: A: chromatin structure-remodeling complex subunit rsc2; crystal structure of the yeast rsc2 bah domain
c4lxuB_ transferase Chain: B: wlard, a sugar 3n-formyl transferase; dtdp-fuc3n and 5-n-formyl-thf
c4bq3A_ hydrolase Chain: A: b-agarase; structural analysis of an exo-beta-agarase
c4b45A_ structural protein Chain: A: cell division protein ftsz; cetz1 from haloferax volcanii - gtpgs bound protofilament
c4gi2B_ oxidoreductase Chain: B: crotonyl-coa carboxylase/reductase; crotonyl-coa carboxylase/reductase
c4ktzB_ hydrolase Chain: B: ruvc endonuclease; lactococcus phage 67 ruvc
c4m0gB_ ligase Chain: B: adenylosuccinate synthetase; the crystal structure of an adenylosuccinate synthetase from bacillus2 anthracis str. ames ancestor.
c4jiwP_ hydrolase/protein binding Chain: P: putative uncharacterized protein; c1882 paar-repeat protein from escherichia coli in complex with a2 vgrg-like beta-helix that is based on a fragment of t4 gp5
c4bhwB_ transferase Chain: B: histone acetyltransferase p300; structural basis for autoinhibition of the acetyltransferase2 activity of p300
c4bhuE_ structural protein Chain: E: uncharacterized protein yuab; crystal structure of bsla - a bacterial hydrophobin
c4lyyA_ transferase Chain: A: hypoxanthine phosphoribosyltransferase; crystal structure of hypoxanthine phosphoribosyltransferase from2 shewanella pealeana atcc 700345, nysgrc target 029677.
c4lsbA_ lyase Chain: A: lyase/mutase; crystal structure of a putative lyase/mutase from burkholderia2 cenocepacia j2315
c4lhbC_ transferase Chain: C: molybdopterin adenylyltransferase; crystal structure of tungsten cofactor synthesizing protein moab from2 pyrococcus furiosus
c4k30B_ transferase Chain: B: n-acetylglutamate synthase, mitochondrial; structure of the n-acetyltransferase domain of human n-acetylglutamate2 synthase
c4glaD_ hydrolase/de novo protein Chain: D: obody nl8; obody nl8 bound to hen egg-white lysozyme
c4gj4A_ lyase Chain: A: soluble guanylyl cyclase alpha-1 subunit; the crystal structure of the soluble guanylate cyclase pas alpha2 domain from manduca sexta
c4b46A_ structural protein Chain: A: cell division protein ftsz; cetz2 from haloferax volcanii - gdp bound monomer
c4gqzB_ metal binding protein Chain: B: putative periplasmic or exported protein; crystal structure of s.cuep
c4behB_ translation Chain: B: 60s acidic ribosomal protein p2; solution structure of human ribosomal protein p1.p2 heterodimer
c4l67B_ transferase Chain: B: serine/threonine-protein kinase pak 4; crystal structure of catalytic domain of pak4
c3zidB_ gtp-binding protein Chain: B: tubulin/ftsz, gtpase; cetz from methanosaeta thermophila strain dsm 6194
c4behA_ translation Chain: A: 60s acidic ribosomal protein p1; solution structure of human ribosomal protein p1.p2 heterodimer
c4bbwA_ hydrolase Chain: A: sialidase (neuraminidase); the crystal structure of sialidase vpi 5482 (btsa) from2 bacteroides thetaiotaomicron
c2lxoA_ antimicrobial protein, de novo protein Chain: A: chimeric peptide; identification of the structural traits mediating the antimicrobial2 activity of a chimeric peptide of hbd2 and hbd3
c4jivD_ hydrolase/protein binding Chain: D: putative uncharacterized protein; vca0105 paar-repeat protein from vibrio cholerae in complex with a2 vgrg-like beta-helix that is based on a fragment of t4 gp5
c4i92A_ transferase Chain: A: probable serine/threonine-protein kinase at5g41260; structure of the bsk8 kinase domain
c4dapA_ dna binding protein Chain: A: sugar fermentation stimulation protein a; dna binding protein
c2m85A_ hydrolase,ligase Chain: A: e3 ubiquitin-protein ligase shprh; phd domain from human shprh
c4lajD_ viral protein/inhibitor Chain: D: cd4-mimetic miniprotein m48u1; crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
c4i7cC_ ligase/ligase inhibitor Chain: C: e3 ubiquitin-protein ligase siah1; siah1 mutant bound to synthetic peptide (ace)klrpv(23p)mvrpwvr
c2ma5A_ oxidoreductase Chain: A: lysine-specific demethylase 5b; solution nmr structure of phd type zinc finger domain of lysine-2 specific demethylase 5b (plu-1/jarid1b) from homo sapiens, northeast3 structural genomics consortium (nesg) target hr7375c
c4lajG_ viral protein/inhibitor Chain: G: cd4-mimetic miniprotein m48u1; crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
c4lajC_ viral protein/inhibitor Chain: C: cd4-mimetic miniprotein m48u1; crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
c4jggB_ hydrolase Chain: B: esterase tesa; crystal structure of tesa
c4ln5A_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 burkholderia ambifaria (bamb_6123), target efi-510059, with bound3 glycerol and chloride ion
c4lzaB_ transferase Chain: B: adenine phosphoribosyltransferase; crystal structure of adenine phosphoribosyltransferase from2 thermoanaerobacter pseudethanolicus atcc 33223, nysgrc target 029700.
c4lajK_ viral protein/inhibitor Chain: K: cd4-mimetic miniprotein m48u1; crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
c4l0mA_ hydrolase Chain: A: putative 5'-methylthioadenosine/s-adenosylhomocysteine crystal structure of a putative 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from borrelia burgdorferi b31 bound3 to adenine (target nysgrc-029268 )
c4k2dA_ oxidoreductase Chain: A: thiol:disulfide interchange protein; crystal structure of burkholderia pseudomallei dsba


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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