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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Aug 10

Fold library idPDB HeaderMoleculeTitle
c4btpI_ viral protein Chain: I: p1; structure of the capsid protein p1 of the bacteriophage phi8
c4b3mV_ ribosome Chain: V: 30s ribosomal protein thx; structure of ribosome 30s-eth-07 complex
c4fyuB_ oxidoreductase Chain: B: thioredoxin; crystal structure of thioredoxin from wuchereria bancrofti at 2.02 angstrom
c3wdoA_ transport protein Chain: A: mfs transporter; a structure of protein.
c3j1bA_ chaperone Chain: A: chaperonin alpha subunit; cryo-em structure of 8-fold symmetric ratcpn-alpha in apo state
c3vxgA_ oxidoreductase Chain: A: conjugated polyketone reductase c2; crystal structure of conjugated polyketone reductase c2 from candida2 parapsilosis
c4luiB_ lyase Chain: B: orotidine 5'-phosphate decarboxylase; crystal structure of orotidine 5'-monophosphate decarboxylase from2 methanocaldococcus jannaschii
c4hfqB_ hydrolase Chain: B: mutt/nudix family protein; crystal structure of udp-x diphosphatase
c4jgiB_ protein binding Chain: B: putative uncharacterized protein; 1.5 angstrom crystal structure of a novel cobalamin-binding protein2 from desulfitobacterium hafniense dcb-2
c3j4bB_ viral protein Chain: B: tail tubular protein a; structure of t7 gatekeeper protein (gp11)
c4i74A_ hydrolase/hydrolase inhibitor Chain: A: inosine-adenosine-guanosine-nucleoside hydrolase; crystal structure of the trypanosoma brucei inosine-adenosine-2 guanosine nucleoside hydrolase in complex with compound uamc-003123 and allosterically inhibited by a ni2+ ion
c4lmfB_ hydrolase Chain: B: complement c1s subcomponent heavy chain; c1s cub1-egf-cub2
c4jjgB_ oxidoreductase Chain: B: 5,10-methenyltetrahydromethanopterin hydrogenase; crystal structure of fe-hydrogenase from methanothermobacter2 marburgensis in complex with toluenesulfonylmethylisocyanide
c4lk3A_ lyase Chain: A: udp-glucuronic acid decarboxylase 1; crystal structure of human udp-xylose synthase r236a substitution
c4jvcA_ transcription regulator Chain: A: transcriptional regulator mvfr; crystal structure of pqsr co-inducer binding domain
c4dk4A_ hydrolase/hydrolase inhibitor Chain: A: deoxyuridine triphosphatase; crystal structure of trypanosoma brucei dutpase with dupnp, ca2+ and2 na+
c3j4aJ_ viral protein Chain: J: head-to-tail joining protein; structure of gp8 connector protein
c4fymA_ transferase Chain: A: orotate phosphoribosyltransferase; crystal structure of plasmodium falciparum orotate2 phosphoribosyltransferase
c4losA_ hydrolase Chain: A: complement c1s subcomponent heavy chain; c1s cub2-ccp1
c4bihC_ immune system Chain: C: uncharacterized lipoprotein saouhsc_00053; crystal structure of the conserved staphylococcal antigen 1a, csa1a
c4kyxA_ hydrolase Chain: A: adp-ribose pyrophosphatase mutt; crystal structure of adp-ribose pyrophosphatase mutt from rickettsia2 felis
c4imiA_ hydrolase Chain: A: symplekin; novel modifications on c-terminal domain of rna polymerase ii can2 fine- tune the phosphatase activity of ssu72.
c2rt6A_ dna binding protein Chain: A: primosomal replication protein n''; backbone 1h, 13c, and 15n chemical shift assignments for pric n-2 terminal domain
c3vv3B_ hydrolase Chain: B: deseasin mcp-01; crystal structure of deseasin mcp-01 from pseudoalteromonas sp. sm9913
c4iglA_ toxin Chain: A: yenb; structure of the rhs-repeat containing bc component of the secreted2 abc toxin complex from yersinia entomophaga
c4lesA_ unknown function Chain: A: protein - conserved hypothetical; 2.2 angstrom crystal structure of conserved hypothetical protein from2 bacillus anthracis.
c4lw2C_ lyase Chain: C: cysteine sulfinate desulfinase; structural changes during cysteine desulfurase csda and sulfur-2 acceptor csde interactions provide insight into the trans-3 persulfuration
c4lbaB_ structural genomics, unknown function Chain: B: conjugative transposon lipoprotein; crystal structure of a conjugative transposon lipoprotein2 (bacegg_03088) from bacteroides eggerthii dsm 20697 at 1.70 a3 resolution
c4bigA_ immune system Chain: A: uncharacterized lipoprotein saouhsc_00053; crystal structure of the conserved staphylococcal antigen 1b, csa1b
c4iglB_ toxin Chain: B: yenc2; structure of the rhs-repeat containing bc component of the secreted2 abc toxin complex from yersinia entomophaga
c4k0xA_ hydrolase Chain: A: beta-lactamase; x-ray crystal structure of oxa-23 from acinetobacter baumannii
c4b3tV_ ribosome Chain: V: 30s ribosomal protein thx; structure of ribosome 30s-eth-63 complex
c4lqzA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (sav1798) from2 staphylococcus aureus subsp. aureus mu50 at 1.92 a resolution
c4hmwB_ oxidoreductase Chain: B: pyridoxamine 5'-phosphate oxidase; crystal structure of phzg from burkholderia lata 383
c4h7uA_ oxidoreductase Chain: A: pyranose dehydrogenase; crystal structure of pyranose dehydrogenase from agaricus meleagris,2 wildtype
c4hr6A_ sugar binding protein Chain: A: lectin; crystal structure of snake gourd (trichosanthes anguina) seed lectin,2 a three chain homologue of type ii rips
c4btcU_ ribosome Chain: U: 30s ribosomal protein thx; thermus thermophilus ribosome
c4lhsA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacova_00914) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
c4b3rV_ ribosome Chain: V: 30s ribosomal protein thx; structure of ribosome 30s-eth-48 complex
c4k7eA_ viral protein Chain: A: nucleoprotein; crystal structure of junin virus nucleoprotein
c2m19A_ protein binding Chain: A: molybdopterin converting factor subunit 1; solution structure of the haloferax volcanii hvo 2177 protein
c4hr6B_ sugar binding protein Chain: B: lectin; crystal structure of snake gourd (trichosanthes anguina) seed lectin,2 a three chain homologue of type ii rips
c4b3sV_ ribosome Chain: V: 30s ribosomal protein thx; structure of ribosome 30s-eth-rp07 complex
c4hr6C_ sugar binding protein Chain: C: lectin; crystal structure of snake gourd (trichosanthes anguina) seed lectin,2 a three chain homologue of type ii rips
c4lotA_ hydrolase Chain: A: complement c1s subcomponent heavy chain; c1s cub2-ccp1-ccp2
c4lruA_ lyase Chain: A: glyoxalase iii (glutathione-independent); crystal structure of glyoxalase iii (orf 19.251) from candida albicans
c4h60A_ signaling protein Chain: A: chemotaxis protein chey; high resolution structure of vibrio cholerae chemotaxis protein chey42 crystallized in low ph (4.0) condition
c4h5sB_ cell adhesion Chain: B: cell adhesion molecule 1; complex structure of necl-2 and crtam
c4lg8A_ dna binding protein Chain: A: pre-mrna-processing factor 19; crystal structure of prpf19 wd40 repeats


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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