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 Protein Homology/analogY Recognition Engine V 2.0


New fold library entries added 2013 Jul 13

Fold library idPDB HeaderMoleculeTitle
c4b09F_ transcription Chain: F: transcriptional regulatory protein baer; structure of unphosphorylated baer dimer
c3wb8H_ motor protein Chain: H: unconventional myosin-va; crystal structure of myova-gtd
c4l3rB_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of a hypothetical protein (bacegg_01241) from2 bacteroides eggerthii dsm 20697 at 2.23 a resolution
c3j40N_ virus Chain: N: gp10; validated near-atomic resolution structure of bacteriophage epsilon152 derived from cryo-em and modeling
c4icaA_ viral protein Chain: A: matrix protein p15; crystal structure of a c-terminal truncated form of the matrix subunit2 (p15) of feline immunodeficiency virus (fiv)
c3w6gP_ oxidoreductase Chain: P: probable peroxiredoxin; structure of peroxiredoxin from anaerobic hyperthermophilic archaeon2 pyrococcus horikoshii
c4ikyA_ transport protein Chain: A: di-tripeptide abc transporter (permease); crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
c4gkvC_ oxidoreductase Chain: C: alcohol dehydrogenase, propanol-preferring; structure of escherichia coli adhp (ethanol-inducible dehydrogenase)2 with bound nad
c4krrA_ signaling protein Chain: A: wnt inhibitor of dorsal protein; crystal structure of drosophila wntd n-terminal domain-linker2 (residues 31-240)
c4lb8A_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bt3222) from bacteroides2 thetaiotaomicron vpi-5482 at 2.49 a resolution
c4j56A_ oxidoreductase Chain: A: thioredoxin reductase 2; structure of plasmodium falciparum thioredoxin reductase-thioredoxin2 complex
c4jodA_ hydrolase Chain: A: lysophosphatidic acid phosphatase type 6; crystal structure of human lysophosphatidic acid phosphatase type 62 complexed with tris
c4b0nB_ transferase Chain: B: polyketide synthase iii; crystal strucutre of pks-i from the brown algae ectocarpus2 siliculosus
c4hnzG_ hydrolase Chain: G: hslvu complex proteolytic subunit, putative; crystal structure of eukaryotic hslv from trypanosoma brucei
c3zddA_ hydrolase/dna Chain: A: protein xni; structure of e. coli exoix in complex with the palindromic2 5ov6 oligonucleotide and potassium
c4jhjD_ translation Chain: D: dead/h (asp-glu-ala-asp/his) box polypeptide 19 (dbp5 crystal structure of danio rerio slip1 in complex with dbp5
c4kp3C_ motor protein/protein transport Chain: C: rilp-like protein 2; crystal structure of myova-gtd in complex with two cargos
c4kkuD_ membrane protein Chain: D: membrane fusion protein; structure of besa (selenomethinone derivative - p212121)
c4i9gB_ hydrolase Chain: B: glycerol 3-phosphate phosphatase; crystal structure of glycerol phosphate phosphatase rv1692 from2 mycobacterium tuberculosis in complex with magnesium
c4lfgB_ transferase Chain: B: geranylgeranyl diphosphate synthase; crystal structure of geranylgeranyl diphosphate synthase sub12742 (target efi-509455) from streptococcus uberis 0140j with bound3 magnesium and isopentyl diphosphate, fully liganded complex;
c4lfyB_ hydrolase Chain: B: dihydroorotase; crystal structure of a dihydroorotase from burkholderia cenocepacia2 j2315
c2m9xA_ transferase Chain: A: microtubule-associated serine/threonine-protein kinase 1; solution nmr structure of microtubule-associated serine/threonine-2 protein kinase 1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr9151a
c4lepB_ membrane protein, tranport protein Chain: B: proton:oligopeptide symporter pot family; structural insights into substrate recognition in proton dependent2 oligopeptide transporters
c4jhkC_ translation Chain: C: sb:cb157 protein; crystal structure of danio rerio slip1 in complex with slbp
c4h32L_ viral protein Chain: L: hemagglutinin; the crystal structure of the hemagglutinin h17 derived the bat2 influenza a virus
c3vz0B_ oxidoreductase Chain: B: putative nad-dependent aldehyde dehydrogenase; structural insights into cofactor and substrate selection by gox0499
c4jhjC_ translation Chain: C: dead/h (asp-glu-ala-asp/his) box polypeptide 19 (dbp5 crystal structure of danio rerio slip1 in complex with dbp5
c4kqzA_ viral protein Chain: A: s protein; structure of the receptor binding domain (rbd) of mers-cov spike
c4kisA_ recombination/dna Chain: A: putative integrase [bacteriophage a118]; crystal structure of a lsr-dna complex
c4lerA_ sugar binding protein Chain: A: putative outer membrane protein, probably involved in crystal structure of a putative outer membrane protein, probably2 involved in nutrient binding (bvu_1254) from bacteroides vulgatus3 atcc 8482 at 1.42 a resolution
c4k6nA_ lyase Chain: A: aminodeoxychorismate lyase; crystal structure of yeast 4-amino-4-deoxychorismate lyase
c4bfhA_ hydrolase inhibitor Chain: A: wrightide r1; crystal structure of alpha-amylase inhibitor wrightide r1 (wr1)2 peptide from wrightia religiosa
c4fuvA_ transport protein Chain: A: porin protein associated with imipenem resistance; crystal structure of acinetobacter baumannii caro
c2ma1A_ dna binding protein Chain: A: dna helicase recq; solution structure of hrdc1 domain of recq helicase from deinococcus2 radiodurans
c2yomA_ signaling protein Chain: A: sensory box protein; solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida
c4fzsB_ protein transport Chain: B: sorting nexin-1; structure of human snx1 bar domain
c4g12A_ dna binding protein Chain: A: probable transcriptional regulatory protein (probably tetr- crystal structure of putative tetr family transcriptional regulator,2 fad35r, from mycobacterium tuberculosis
c4hxyA_ oxidoreductase Chain: A: plm1; plmkr1-ketoreductase from the first module of phoslactomycin2 biosynthesis in streptomyces sp. hk803
c4l9dB_ cell adhesion Chain: B: protease; crystal structure of the pkd1 domain from vibrio cholerae2 metalloprotease prtv
c4bgnB_ transport protein Chain: B: voltage-gated sodium channel; cryo-em structure of the navct voltage-gated sodium channel
c4gc5A_ transferase Chain: A: dimethyladenosine transferase 1, mitochondrial; crystal structure of murine tfb1m
c2yonA_ signaling protein Chain: A: sensory box protein; solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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