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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Apr 27

Fold library idPDB HeaderMoleculeTitle
c4idxA_ dna binding protein Chain: A: nucleocapsid protein; hexameric crystal structure of schmallenberg virus nucleoprotein
c3vs9F_ transferase Chain: F: type iii polyketide synthase; crystal structure of type iii pks arsc mutant
c4i4sC_ sugar binding protein Chain: C: bel beta-trefoil; bel beta-trefoil complex with lactose
c4e8hD_ transferase Chain: D: glutathione s-transferase; structural of bombyx mori glutathione transferase bmgstd1 complex with2 gtt
c4ijsB_ rna binding protein/rna Chain: B: nucleoprotein; crystal structure of nucleocapsid protein encoded by the prototypic2 member of orthobunyavirus
c4k2hG_ unknown function Chain: G: intracellular protease/amidase; crystal structure of c103a mutant of dj-1 superfamily protein stm19312 from salmonella typhimurium
c4aq2I_ oxidoreductase Chain: I: homogentisate 1,2-dioxygenase; resting state of homogentisate 1,2-dioxygenase
c4itaA_ oxidoreductase Chain: A: succinate-semialdehyde dehydrogenase; structure of bacterial enzyme in complex with cofactor
c4jatB_ transferase Chain: B: alpha-pyrone synthesis polyketide synthase-like pks11; crystal structure of mycobacterium tuberculosis pks11 reveals2 intermediates in the synthesis of methyl-branched alkylpyrones
c4jdrB_ oxidoreductase Chain: B: dihydrolipoyl dehydrogenase; dihydrolipoamide dehydrogenase of pyruvate dehydrogenase from2 escherichia coli
c3j2wH_ virus Chain: H: glycoprotein e1; electron cryo-microscopy of chikungunya virus
c4eq2A_ immune system Chain: A: interferon gamma receptor 1; crystal structure analysis of chicken interferon gamma receptor alpha2 chain
c4iplA_ hydrolase Chain: A: 6-phospho-beta-glucosidase; the crystal structure of 6-phospho-beta-glucosidase bgla-2 from2 streptococcus pneumoniae
c4jesA_ heme binding protein, transport protein Chain: A: hemophore hasa; 1.6a resolution apo structure of the hemophore hasa from yersinia2 pestis (hexagonal form)
c4bhhZ_ viral protein/rna Chain: Z: nucleoprotein; crystal structure of tetramer of la crosse virus nucleoprotein in2 complex with ssrna
c4fhtA_ transcription Chain: A: pcav transcriptional regulator; crystal structure of the pcav transcriptional regulator from2 streptomyces coelicolor in complex with its natural ligand
c3zdoC_ viral protein Chain: C: phosphoprotein; tetramerization domain of measles virus phosphoprotein
c4bejB_ hydrolase Chain: B: dynamin 1-like protein; nucleotide-free dynamin 1-like protein (dnm1l, drp1, dlp1)
c4bepB_ transferase Chain: B: phosphocholine transferase ankx; crystal structure of the legionella pneumophila fic domain-2 containing effector ankx protein (apo-form)
c4eigB_ oxidoreductase/immune system Chain: B: ca1698 camel antibody fragment; ca1698 camel antibody fragment in complex with dhfr
c2m0tA_ protein binding Chain: A: na(+)/h(+) exchange regulatory cofactor nhe-rf1; structural characterization of the extended pdz1 domain from nherf1
c4h3sA_ ligase Chain: A: glutamine-trna ligase; the structure of glutaminyl-trna synthetase from saccharomyces2 cerevisiae
c4ej9U_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the bacterial ribosome ram mutation g299a. this2 entry contains the 30s ribosomal subunit of the first 70s molecule in3 the asymmetric unit
c3w6kC_ cell cycle Chain: C: scpb; crystal structure of dimer of scpb n-terminal domain complexed with2 scpa peptide
c3zdoE_ viral protein Chain: E: phosphoprotein; tetramerization domain of measles virus phosphoprotein
c4iu2A_ structural protein Chain: A: cell-wall anchoring protein; cohesin-dockerin -x domain complex from ruminococcus flavefacience
c4jrrC_ oxidoreductase Chain: C: thiol:disulfide interchange protein dsba; crystal structure of disulfide bond oxidoreductase dsba1 from2 legionella pneumophila
c3w5iB_ metal transport Chain: B: ferrous iron transport protein b; crystal structure of nfeob from gallionella capsiferriformans
c4k3wA_ isomerase Chain: A: enoyl-coa hydratase/isomerase; crystal structure of an enoyl-coa hydratase/isomerase from2 marinobacter aquaeolei
c3w6jA_ cell cycle Chain: A: scpa; crystal structure of scpab core complex
c2lrwA_ cell cycle Chain: A: ubiquitin, putative; solution structure of a ubiquitin-like protein from trypanosoma brucei
c4hasA_ protein transport Chain: A: sorting nexin-27; crystal structure of px domain of human sorting nexin snx27
c4hrvB_ lipid binding protein Chain: B: putative lipoprotein gna1162; crystal structure of lipoprotein gna1162 from neisseria meningitidis
c4ejaU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the bacterial ribosome ram mutation g299a. this2 entry contains the 30s ribosomal subunit of the second 70s molecule3 in the asymmetric unit
c4jkvA_ membrane protein Chain: A: soluble cytochrome b562, smoothened homolog; structure of the human smoothened 7tm receptor in complex with an2 antitumor agent
c4j1yA_ hydrolase Chain: A: complement c1s subcomponent; the x-ray crystal structure of human complement protease c1s zymogen
c3w6jC_ cell cycle Chain: C: scpb; crystal structure of scpab core complex
c3v6vU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the bacterial ribosome ram mutation g347u. this2 entry contains the 30s ribosomal subunit of the second 70s molecule3 in the asymmetric unit
c4iu3B_ structural protein Chain: B: cellulose-binding protein; cohesin-dockerin -x domain complex from ruminococcus flavefacience
c4ikbB_ protein transport Chain: B: sorting nexin-11; crystal structure of snx11 px domain
c3zh3A_ transferase Chain: A: udp-n-acetylglucosamine 1-carboxyvinyltransferase; crystal structure of s. pneumoniae d39 native mura1
c3j2wS_ virus Chain: S: glycoprotein e2; electron cryo-microscopy of chikungunya virus
c4go1A_ transcription Chain: A: transcriptional regulator lsrr; crystal structure of full length transcription repressor lsrr from e.2 coli.
c4k29A_ isomerase Chain: A: enoyl-coa hydratase/isomerase; crystal structure of an enoyl-coa hydratase/isomerase from2 xanthobacter autotrophicus py2
c4alzA_ membrane protein Chain: A: yop proteins translocation protein d; the yersinia t3ss basal body component yscd reveals a different2 structural periplasmatic domain organization to known homologue prgh
c4hdjA_ protein binding Chain: A: outer membrane protein assembly factor bamb; crystal structure of bamb from pseudomonas aeruginosa
c3j2wE_ virus Chain: E: glycoprotein e1; electron cryo-microscopy of chikungunya virus
c4jwoA_ phosphate binding protein Chain: A: phosphate binding protein; the crystal structure of a possible phosphate binding protein from2 planctomyces limnophilus dsm 3776
c4iiqC_ immune system Chain: C: beta-2-microglobulin, mhc class i-related protein; crystal structure of a human mait tcr in complex with bovine mr1
c4k2nA_ isomerase Chain: A: enoyl-coa hydratase/carnithine racemase; crystal structure of an enoyl-coa hydratase/ carnithine racemase from2 magnetospirillum magneticum
c3v6uU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the bacterial ribosome ram mutation g347u. this2 entry contains the 30s ribosomal subunit of the first 70s molecule in3 the asymmetric unit
c4k3fA_ transport protein Chain: A: probable tonb-dependent receptor; crystal structure of a putative tonb-dependent receptor (pa5505) from2 pseudomonas aeruginosa pao1 at 1.60 a resolution


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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