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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Mar 02

Fold library idPDB HeaderMoleculeTitle
c4dwsB_ sugar binding protein Chain: B: chi2; crystal structure of a chitinase from the yersinia entomophaga toxin2 complex
c4f77t_ splicing Chain: T: small nuclear ribonucleoprotein f; the 8s snrnp assembly intermediate
c4dv4U_ ribosome Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, a914g
c3znuI_ lyase Chain: I: 5-chloromuconolactone dehalogenase; crystal structure of clcf in crystal form 2
c4huhD_ viral protein Chain: D: tail connector protein gp15; structure of the bacteriophage t4 tail terminator protein, gp15 (c-2 terminal truncation mutant 1-261).
c4ifwA_ hydrolase/hydrolase inhibitor Chain: A: thiamine biosynthesis lipoprotein apbe; crystal structure of treponema pallidum tp0796 fad processing protein,2 adp inhibited form
c4fydA_ transferase/dna Chain: A: dna polymerase alpha catalytic subunit a; crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
c4htgA_ transferase/transferase inhibitor Chain: A: porphobilinogen deaminase, chloroplastic; porphobilinogen deaminase from arabidopsis thaliana
c4bd4H_ oxidoreductase Chain: H: superoxide dismutase [cu-zn]; monomeric human cu,zn superoxide dismutase, loops iv and2 vii deleted, apo form, mutant h43f
c3vrkA_ hydrolase Chain: A: carbonyl sulfide hydrolase; crystal structutre of thiobacillus thioparus thi115 carbonyl sulfide2 hydrolase / thiocyanate complex
c4dv7U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, a915g, bound with streptomycin
c3vuqD_ transcription regulator Chain: D: transcriptional regulator (tetr/acrr family); crystal structure of ttha0167, a transcriptional regulator, tetr/acrr2 family from thermus thermophilus hb8
c3vpbC_ ligase Chain: C: putative acetylornithine deacetylase; argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
c4dv1U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, u20g, bound with streptomycin
c4gejD_ protein binding Chain: D: thioredoxin-interacting protein; n-terminal domain of vdup-1
c4fmmA_ lipid binding protein Chain: A: phosphatidylinositol transfer protein pdr16; dimeric sec14 family homolog 3 from saccharomyces cerevisiae presents2 some novel features of structure that lead to a surprising "dimer-3 monomer" state change induced by substrate binding
c4egcA_ transcription/hydrolase Chain: A: maltose-binding periplasmic protein, homeobox protein six1 crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
c3vsvD_ hydrolase Chain: D: xylosidase; the complex structure of xylc with xylose
c4dwlA_ nucleic acid binding protein Chain: A: bbp7; avd molecule from bordetella bacteriophage dgr
c3vx3A_ adp binding protein Chain: A: atpase involved in chromosome partitioning, para/mind crystal structure of [nife] hydrogenase maturation protein hypb from2 thermococcus kodakarensis kod1
c4b6vA_ translation Chain: A: eukaryotic translation initiation factor 4e type 3; the third member of the eif4e family represses gene expression via a2 novel mode of recognition of the methyl-7 guanosine cap moiety
c4duyU_ ribosome Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, u13c
c4dv6U_ ribosome Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, a915g
c3vwxA_ transferase Chain: A: glutathione s-transferase 6b; structural analysis of an epsilon-class glutathione s-transferase from2 housefly, musca domestica
c4dv5U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, a914g, bound with streptomycin
c3vvwA_ protein transport Chain: A: calcium-binding and coiled-coil domain-containing protein ndp52 in complex with lc3c
c4hsrB_ hydrolase Chain: B: glutaryl-7-aminocephalosporanic acid acylase beta chain; crystal structure of a class iii engineered cephalosporin acylase
c4gklA_ hydrolase Chain: A: alpha-amylase; crystal structure of a noncanonic maltogenic alpha-amylase amyb from2 thermotoga neapolitana
c4ja0A_ protein binding Chain: A: phosphoribosylaminoimidazole carboxylase; crystal structure of the invertebrate bi-functional purine2 biosynthesis enzyme paics at 2.8 a resolution
c4i79B_ cell cycle Chain: B: nucleoporin nup43; crystal structure of human nup43
c4dv2U_ ribosome Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, c912a
c4hsrA_ hydrolase Chain: A: glutaryl-7-aminocephalosporanic acid acylase alpha chain; crystal structure of a class iii engineered cephalosporin acylase
c4hbrD_ structural genomics, unknown function Chain: D: putative periplasmic protein; crystal structure of a putative periplasmic proteins (bacegg_01429)2 from bacteroides eggerthii dsm 20697 at 2.40 a resolution
c3vvwB_ protein transport Chain: B: microtubule-associated proteins 1a/1b light chain 3c; ndp52 in complex with lc3c
c4dv3U_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, c912a, bound with streptomycin
c4eycA_ unknown function Chain: A: cathelicidin antimicrobial peptide; crystal structure of the cathelin-like domain of human cathelicidin2 ll-37 (hcld)
c4duzU_ ribosome/antibiotic Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, u13c, bound with streptomycin
c4ijjA_ hydrolase Chain: A: putative c4-type zinc finger protein, dksa/trar family; structure of transcription factor dksa2 from pseudomonas aeruginosa
c3ziuB_ ligase Chain: B: leucyl-trna synthetase; crystal structure of mycoplasma mobile leucyl-trna2 synthetase with leu-ams in the active site
c4ixoB_ protein binding Chain: B: nifs-like protein; x-ray structure of nifs-like protein from rickettsia africae esf-5
c4iilA_ membrane protein Chain: A: membrane lipoprotein tpn38(b); crystal structure of rfua (tp0298) of t. pallidum bound to riboflavin
c3vpbF_ ligase Chain: F: alpha-aminoadipate carrier protein lysw; argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
c2m4mA_ unknown function Chain: A: hypothetical protein; solution structure of the rrm domain of the hypothetical protein2 cagl0m09691g from candida glabrata
c4dv0U_ ribosome Chain: U: ribosomal protein thx; crystal structure of the thermus thermophilus 30s ribosomal subunit2 with a 16s rrna mutation, u20g
c4g0rA_ virus/dna Chain: A: capsid protein vp1; structural characterization of h-1 parvovirus: comparison of2 infectious virions to replication defective particles
c4fqgB_ transcription Chain: B: transcription elongation regulator 1; crystal structure of the tcerg1 ff4-6 tandem repeat domain
c4j2fA_ lyase, transferase Chain: A: glutathione s-transferase; crystal structure of a glutathione transferase family member from2 ricinus communis, target efi-501866
c2m0sA_ viral protein Chain: A: ns2a protein; solution structure of the trans-membrane domain of the ns2a of dengue2 virus
c2lxyA_ de novo protein Chain: A: 2-mercaptophenol-alpha3c; nmr structure of 2-mercaptophenol-alpha3c
c3ziuA_ ligase Chain: A: leucyl-trna synthetase; crystal structure of mycoplasma mobile leucyl-trna2 synthetase with leu-ams in the active site


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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