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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7k17B_

Fold library idPDB HeaderMoleculeTitle
c7k17B_4.30PDB header: dna binding proteinChain: B: PDB Molecule: dna-dependent protein kinase catalytic subunit;


Added to library: Sat Jan 9 21:13:58 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSIE
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)

TTSSSSTT

SS

SSSSSSS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence FRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRAAKCKIPALDLLIKLLQTFRSSRLMDEF
Predicted secondary structure









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Known secondary structure (DSSP) TTTTSSS


SSST


SSSS

SSSSSSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KIGELFSKFYGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPKL
Predicted secondary structure












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Known secondary structure (DSSP)
TTSS
S


SS
TTTTTSTTS
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence PVLAGCLKGLSSLLCNFTDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVS
Predicted secondary structure








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Known secondary structure (DSSP) TSS


TTSS
S

TT
T
SS
SGGGSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNNKELSIA
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TT


TTTTTT
SS
SSS

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence IRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEH
Predicted secondary structure





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Known secondary structure (DSSP) TSSTTSS
SSTTTSS







S

SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVVLVPTYKDYVDL
Predicted secondary structure












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Known secondary structure (DSSP) TSSSS
TTTTTSS
TTTGGGTTS






STTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence FRHLLSSDQMMDSILASLNHLLYDEFVKSVLKIVEKLDLTLEIQTMIPTSDPAANLHPAKPKDFSAFINL
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Known secondary structure (DSSP) SSTTTSSS



TTS



B






SSSSSS


BS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGKYSCFALFVKF
Predicted secondary structure








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Known secondary structure (DSSP)
SS

SSSSTTSTT
TTS





 .........640.........650.........660.........670.........680.........690.........700
Sequence GKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNALEEWSIYI
Predicted secondary structure












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Known secondary structure (DSSP) GGG

S

SS

TTTTTT
SS
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence DRHVMQPYYKDILPCLDGYLKISLEEIRIRVVQMLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSF
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Known secondary structure (DSSP)
TTTTTTTTTTTTTTSSTT



T
STTGGGTT
S
S
SSGGGTSS
S
SS


 .........780.........790.........800.........810.........820.........830.........840
Sequence AVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQPPMYQLYKRTFPVLLRL
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Known secondary structure (DSSP)


SS


TTTTS
S
TT



 .........850.........860.........870.........880.........890.........900.........910
Sequence ACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIK
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Known secondary structure (DSSP) TSS
STTTSSTTTTSSSSSS
TTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence QITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEESLVEQFVFEALVIYMESLA
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Known secondary structure (DSSP) SS
TTTTTS
TTST
S
SSSSSSS
SSTTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASLCLLDLVKWLLAHCGRPQTE
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Known secondary structure (DSSP) TTTS
TTT
TTT









SSS


S


TTT
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGQATLCWLDLLLAALECYNTFIG
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Known secondary structure (DSSP) GGGSTT

TTTTTT
SSTT




TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ERTVGALQVLGTEAQSSLLKAVAFFLESIAMSPQEGERYNYSKCTVVVRIMEFTTTLLNTLKKDLCNTHL
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Known secondary structure (DSSP) STTS
SSSSS

STTTT

TTTT


TT




 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence MRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYG
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Known secondary structure (DSSP) S

TTTT

TT
STTSTTTTS
S
S
SSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence PDAQVDRSRLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGPSLDLSCKQLASGL
Predicted secondary structure






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Known secondary structure (DSSP) S
ST
STTTS


SSSS

TTS





 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LELAFAFGGLCERLVSLLLNPAVLSTAFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSA
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Known secondary structure (DSSP) TTSS

S









SS
SSS
SSTSSSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence VLNGMLDQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSH
Predicted secondary structure









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Known secondary structure (DSSP) TTS
SSS

TT
GGG

SSSSSS

SSSSS
S
SSSSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence GSFPEVFTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPR
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Known secondary structure (DSSP) SS
STTS
TT
TTTTTS
TTSS
SSS



TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVYEMF
Predicted secondary structure







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Known secondary structure (DSSP) S

TTSSS
TT

S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence RKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMGYYK
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Known secondary structure (DSSP) S




STTSS
TT

TTTS



S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence ILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHCAAY
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Known secondary structure (DSSP) SS
TSTTTTS
SS


TT
SSTTTTTT



SS

SS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence NCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKRRYNFPVEVRKKKYIEIRKEAREASTLSEE
Predicted secondary structure






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Known secondary structure (DSSP) TTS

SSSTTTSTTS


GGGT

SSTTTS

SS











S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence MSQFDFSTGELEMDELNRHECMAPLTALVKHMHRSLPRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVIN
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SS confidence





































































Known secondary structure (DSSP)






SSS
SSSTT




TTTT
SSS
T
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence TEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLMKH
Predicted secondary structure














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Known secondary structure (DSSP) TSTTTTTSS

SS
TTT

STTTSS
SS

SS

S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence VFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIVMANDLPPYDPQC
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Known secondary structure (DSSP)


S

SS




S



TTS
TTSS



TTT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVMERKNILEESLCELVAKQLKQHQNTMEDKFIV
Predicted secondary structure














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Known secondary structure (DSSP) SS

TTSTTTTT
TT
S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence CLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCRVEGMTELYFQLKSKDFVQVMRHRDDERQ
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Known secondary structure (DSSP) TS
GGGSTTTT
SS
TTT
SS



TTSSSS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence KVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCREQMYNILMWIHDNYRDPESETDNDSQEIFKLA
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Known secondary structure (DSSP) TGGGS
TTTTTTTTT
SS
SS


TT



TTTT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDY
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Known secondary structure (DSSP) TTTTS
S
TTSSTTTS

SSGGG

TT

TTTTSSSSS

 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence PNPMFEHPLSECEFQEYTIDSDWRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPDIQI
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Known secondary structure (DSSP) S
SS
S
SS



S






SS





S
GGGGS
TTTT







 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence KHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPFV
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)
STTTTT
TTSSS

SS

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence SCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALDVLRWVELAKLYRSIGEYDVLRGIFTSE
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Known secondary structure (DSSP) STTSSS

TT





GGG

T
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence IGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHLAEWKSLEYCST
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Known secondary structure (DSSP) S


TT
T
S

TT



TTTT

S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence ASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQKAILELHYSQEL
Predicted secondary structure
















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Known secondary structure (DSSP)
SS
SSS

TTTTTTSSTSSTT


SSTSSSTSS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence SLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVP
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Known secondary structure (DSSP) TT

S
TTSTTTTS
STTTS
S
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence LKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLTDISSLIRSCKFSMKMKMIDSARKQNNFS
Predicted secondary structure














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Known secondary structure (DSSP) TTS


TTTS




TTT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence LAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVSSYLSKNILAF
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Known secondary structure (DSSP) TTTTSSTTTS
TTTTTSSSSSTTTTTTT
STT
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence RDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELDSEKVIAGLYQRAFQHLSEAVQAAAGVIDAY
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) S
SSTTTS



STTT


SS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence MTLADFCDQQLRKEEEQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETLSLMTKEISSVPCW
Predicted secondary structure














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Known secondary structure (DSSP) TT


TSSS
STS

SSSSSS
TT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence QFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEFVARIKSKLD
Predicted secondary structure




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Known secondary structure (DSSP) SSGGGTTSSSSSS
GGGS
SSSSTS



SSSTT
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence QGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVNKKNIEKMYERMYAALGDPKAPGLGAFRRKFI
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Known secondary structure (DSSP) TTS
TTS
TTTTTS
TTS
STSSSTS

TTT
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence QTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPG
Predicted secondary structure




























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Known secondary structure (DSSP) TTTTTTTTTTTGGG



S

TTTSS
SS
SSGGGST



SSSS



SS
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence QYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNG
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)


SSS


GGGS


S


SSSS

TTTS

T
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence ILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWL
Predicted secondary structure






























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Known secondary structure (DSSP) TTSTTT






TT

TTS
S
TTS
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence TKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICI
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Known secondary structure (DSSP) S

STTS

TTS
STT
SS
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence SHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSI
Predicted secondary structure








































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Known secondary structure (DSSP) TT




GGGTTT







STTSSS


SSS


TTS
TTSS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence MVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLKKGGSWIQEINVAEKNWYPRQKICYAKRKLAG
Predicted secondary structure























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Known secondary structure (DSSP) TTSSSTSTT
SSSS
SS




SSGGG


S
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence ANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEPESGLSEETQVKCLMDQATDPNILGRTWEG
Predicted secondary structure




























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Known secondary structure (DSSP) B
SS
SSSTT

SSS
GGGSS
SBS

S
SSS
TT
 .....
Sequence WEPWM
Predicted secondary structure




SS confidence




Known secondary structure (DSSP) T
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
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