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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6y6kA_

Fold library idPDB HeaderMoleculeTitle
c6y6kA_3.78PDB header: viral proteinChain: A: PDB Molecule: rna-dependent rna polymerase;


Added to library: Sat Apr 11 08:27:26 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNLEVLCGRINVENGLSLGEPGLYDQIYDRPGLPDLDVTVDATGVTVDIGAVPDSASQLGSSINAGLITI
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Known secondary structure (DSSP)

STT



S





S







SS





SS



SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence QLSEAYKINHDFTFSGLSKTTDRRLSEVFPITHDGSDGMTPDVIHTRLDGTIVVVEFSTTRSHNIGGLEA
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Known secondary structure (DSSP) GGGSTTTTSTT






S


SSSTTS


S
SSS





S
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence AYRTKIEKYRDPISRRVDIMENPRVFFGVIVVSSGGVLSNMPLTQDEAEELMYRFCIANEIYTKARSMDA
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Known secondary structure (DSSP) TT
SS


SSSS


TT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence DIELQKSEEELEAISRALSFFSLFEPNIERVEGTFPNSEIKMLEQFLSTPADVDFITKTLKAKEVEAYAD
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Known secondary structure (DSSP) SSS



S



STT

TS


 .........290.........300.........310.........320.........330.........340.........350
Sequence LCDSHYLKPEKTIQERLEINRCEAIDKTQDLLAGLHARSNKQTSLNRGTVKLPPWLPKPSSGAYGELWAK
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Known secondary structure (DSSP) TT
SS


SS


S




SS
S









 .........360.........370.........380.........390.........400.........410.........420
Sequence CLLSHETLSPFLDVEDIGDFLTFNNLLTDSRYGDESIQRAVSILLEKASAMQDTELTHALNDSFKRNLSS
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Known secondary structure (DSSP)






S




STTS
SSSSB
S

SSTTT
S


SSB
 .........430.........440.........450.........460.........470.........480.........490
Sequence NVVQWSLWVSCLAQELASALKQHCRAGEFIIKKLKFWPIYVIIKPTKSSSHIFYSLGIRKADVTRRLTGR
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Known secondary structure (DSSP) TTTTTTTTS



SS


TTS




SSSS

B


BB
SSS






S
 .........500.........510.........520.........530.........540.........550.........560
Sequence VFSDTIDAGEWELTEFKSLKTCKLTNLVNLPCTMLNSIAFWREKLGVAPWLVRKPCSELREQVGLTFLIS
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Known secondary structure (DSSP) SS



SS




B

SSTTSTTTSSS

TT





SSST
 .........570.........580.........590.........600.........610.........620.........630
Sequence LEDKSKTEEIITLTRYTQMEGFVSPPMLPKPQKMLGKLDGPLRTKLQVYLLRKHLDCMVRIASQPFSLIP
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Known secondary structure (DSSP) TS

TTTSSTTGGGSTTSB
TTS


GGGG
SSS




SSSTTTT



 .........640.........650.........660.........670.........680.........690.........700
Sequence REGRVEWGGTFHAISGRSTNLENMVNSWYIGYYKNKEESTELNALGEMYKKIVEMEEDKPSSPEFLGWGD
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Known secondary structure (DSSP)
SSS




SSS




TTS
SS




S



SSGGGG

S
TTTTTSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence TDSPKKHEFSRSFLRAACSSLEREIAQRHGRQWKQNLEERVLREIGTKNILDLASMKATSNFSKDWELYS
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Known secondary structure (DSSP)
SS

SS


TTTTTTS
S

T
BSS



S






TTTTBTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence EVQTKEYHRSKLLEKMATLIEKGVMWYIDAVGQAWKAVLDDGCMRICLFKKNQHGGLREIYVMDANARLV
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Known secondary structure (DSSP) TS
S






SGGGTTTT

BGGGSSTS
S

B

SSSSS


 .........850.........860.........870.........880.........890.........900.........910
Sequence QFGVETMARCVCELSPHETVANPRLKNSIIENHGLKSARSLGPGSININSSNDAKKWNQGHYTTKLALVL
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Known secondary structure (DSSP) TT
SS

SSSTTTTSTT
S





BS
STTS

SSSSSTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence CWFMPAKFHRFIWAAISMFRRKKMMVDLRFLAHLSSDPFREAMTDAFHGNRDVSWMDKGRTYIKTETGMM
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Known secondary structure (DSSP) TTSS
SSSSSSSSS




TTGGG
S

SSB
SSBS

S


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QGILHFTSSLLHSCVQSFYKSYFVSKLKEGYMGESISGVVDVIEGSDDSAIMISIRPKSDMDEVRSRFFV
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Known secondary structure (DSSP) TTTSTTTS
SSS






SS





STTTTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ANLLHSVKFLNPLFGIYSSEKSTVNTVYCVEYNSEFHFHRHLVRPTLRWIAASHQISETEALASRQEDYS
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Known secondary structure (DSSP) TTTGGGTT

B
S


SS
SSS
TT

TS






SSTTSST
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence NLLTQCLEGGASFSLTYLIQCAQLLHHYMLLGLCLHPLFGTFMGMLISDPDPALGFFLMDNPAFAGGAGF
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Known secondary structure (DSSP) TSSTT

TTTTTTTTTT
S

TT


TTSS





SSS
SSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RFNLWRACKTTDLGRKYAYHVVPRVVAAGVYLLGGSLNPNQERMLFPQAQEYDRVCTLLEEVEHLTGKFV
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Known secondary structure (DSSP) TTTTSTTT


TTTTT


S

STTTTTTT

S



 .........1270.........1280.........1290.........
Sequence VRERNIVRSRIDLRSVRLLGAPTISQVVRMNFFPGFSLE
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Known secondary structure (DSSP)


S







TTTTSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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