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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6xs6C_

Fold library idPDB HeaderMoleculeTitle
c6xs6C_3.70PDB header: viral proteinChain: C: PDB Molecule: spike glycoprotein;


Added to library: Sat Jul 25 08:29:38 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHDNPVLPFNDGVYFASTEKSNIIRGWIF
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Known secondary structure (DSSP)

STT
B

SS



S


S
B

SS









SS

SS




 .........80.........90.........100.........110.........120.........130.........140
Sequence GTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVNCTFEYVSFKNLREFVFKNIDGYFKIYSKHTPI
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Known secondary structure (DSSP) SSSBSSS


SSS

S

B

SS











TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLS
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Known secondary structure (DSSP)

SSS

S



B















B



TTS


BTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence ETKCTLKSFTVEKGIYQTSNFRVQPTESIVRTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDI
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Known secondary structure (DSSP) T
SS

S










SSBTTB










TT



B
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVNVFQTRAGCLIGAEHVNNS
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Known secondary structure (DSSP) T

B


B
SSS

B






TTT




T

TT



TT
S
B


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence YECDIPIGAGICASSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICG
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Known secondary structure (DSSP)



TT




B











SS









SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence DSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK
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Known secondary structure (DSSP) S
T
S


SS




SS

STT


TTTS
BTTSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RSFIEDLLFNKVTKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIG
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Known secondary structure (DSSP) B




SS


SS

SSS




TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI
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Known secondary structure (DSSP)

S
SGGG

TTSS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence LSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
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Known secondary structure (DSSP) S
TSS


STTTSSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence SFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT
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Known secondary structure (DSSP)

TT




S
SSS
SSS
SS

SSS


B


TTS
 .........780.......
Sequence FVSGNCDVVIGIVNNTV
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SS confidence
















Known secondary structure (DSSP)
S
STTSTT
B




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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