Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6v4xI_

Fold library idPDB HeaderMoleculeTitle
c6v4xI_3.20PDB header: rna binding protein/rnaChain: I: PDB Molecule: cleavage and polyadenylation specificity factor subunit 2;


Added to library: Sat Feb 22 08:34:42 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLGAL
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)




TT


BSS

B

B

SS

STTTTTTTTTSSS




SSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKG
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TS


S
TTS


SS
TTS

TT



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPR
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)
S




SSTT
B

SSS
B


S


S

SS






SS
S
S


TTSS




 .........220.........230.........240.........250.........260.........270.........280
Sequence RKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSK
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TT



SSSSSSSS
GGGS

SST
 .........290.........300.........310.........320.........330.........340.........350
Sequence SQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKN
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) T

TTS
SS


TT

SSSSSSS
SS
S
SSSSSTTSS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKII
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)
S


SSSSS

SS






S







TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence NQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKA
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) S

SS
SS
TTSS
SS






TT














S

SSS



SS
 .........500.........510
Sequence KDAELAWIDGVLDMIPTLEP
Predicted secondary structure





SS confidence



















Known secondary structure (DSSP) S

S





B






B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D