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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6v1vD_

Fold library idPDB HeaderMoleculeTitle
c6v1vD_3.19PDB header: toxinChain: D: PDB Molecule: vegetative insecticidal protein;


Added to library: Sat Dec 21 08:22:36 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DYFNGIYGFATGIKDIMGMIFKTDTGGSNLTLDEILKNQNLLNDISGKLDGINGDLGDLIAQGNLNSELA
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Known secondary structure (DSSP)

B
T

S


SS
TT

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KELLKISNEQNQMLNHVNAQLNAINSTLNIYLPKITSMLNEVMKQNHVLSLQIEFLSKQLQEISDKLDIL
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Known secondary structure (DSSP) TGGGTTT



 .........150.........160.........170.........180.........190.........200.........210
Sequence NVLINSTLTEITPAYQRIKYVNEKFDELTSTVLNELTELAKSVTKNDMDSFEFYLQTFHDVMTGNNLFGR
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Known secondary structure (DSSP)
STT



STT
T
SSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence SALKTASELITKENVTTRGSEIGKVYNFLIVLTSLQAKAFLTLTACRKLLGLTDIDYTQIMNHHIDGQKR
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Known secondary structure (DSSP)
STT


SS
TT




T
 .........290.........300.........310.........320.........330.........340.........350
Sequence EFRINILPTLSNNFSNPSYSKNRGSDIDDPIVVLEAAPGYALIGFEILNDPLPILKGYQARLKPNYQVDR
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Known secondary structure (DSSP) TGGGS


S


SS



TT
SSSS
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence ESMSETIYGDIHKLFCPKQLEQKYYIKDIEFPEGYVITKIVFEKRLNQLGYEVTANFYDPSTGSIDLNKV
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Known secondary structure (DSSP)


SSS




TTTT
TTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence KVESSDEYSIIKAETDGIYMPLGVVSETFLTPIYGFGLTVDAANAAITLTGKSYLRESLLETDLLNNETY
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Known secondary structure (DSSP)





SS

SB


TTTT
TGGGT



 .........500.........510.........520.........530.........540.........550.........560
Sequence LIASPDGYISSIVENWNITSDNTGSWRANNNNAFVDKASLYTHKDGEFSQFIGNKLKPKTNYVIQYVIKG
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Known secondary structure (DSSP) B
B

SS



SSTT
S

SS

TT

STT




TT


TTT

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence RPAIYLKNNKDTLFEDTKNNFSDFQTVTKKFNSGVNPSEIYFLFKNQSEYEANNFIILEIKSLEFLPQML
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Known secondary structure (DSSP) S
SS

S



SS
SS
STT










S
 .........640.........650.........660.........670.........680.........690.........700
Sequence KPEDWIPSGNVQMKDGGRLEILGDGYFKQFIKLENDSTYHLRLSVKGTGRVSIIDESKYLLFVNVKDEDL
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Known secondary structure (DSSP)
GGG
B

SS

TTT

SS




TT


SS
 .........710.........720.........730.
Sequence TRVIKNTSSKCFIALEGTYSTIFSNVSIVKE
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Known secondary structure (DSSP)
S









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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