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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6upkG_

Fold library idPDB HeaderMoleculeTitle
c6upkG_4.90PDB header: transcription/dnaChain: G: PDB Molecule: fact complex subunit spt16;


Added to library: Sat Dec 14 08:53:20 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSAL
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Known secondary structure (DSSP)


S
SSS

SS

TTTT

TTTTSSS
GGGTT
STTTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GRGNIFPNPEATFVKEITYRASNILNLQNAFRIIKEVQKRYKXXXXXXVKQDSLVINLNRSNPKLKDLYI
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SS
SS










S













SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence RPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTD
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Known secondary structure (DSSP) S
SSSS

TTTT



TTT

TTSSB
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VQFYTEVGEITTDDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLL
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Known secondary structure (DSSP)
B








TTTTSSSSS

B


SSS
BSSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence QPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLN
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Known secondary structure (DSSP)
SS
TTSSS


STT

STT
SSS
SSS



STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) T



S



SS
TTTSGGGTGGGSSS





S



TT



TT











 ...
Sequence XXX
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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