PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6u7kB_

Fold library id	PDB Header	Molecule	Title
c6u7kB_	3.14	PDB header: viral protein	Chain: B: PDB Molecule: spike glycoprotein;

Links to external resources
Added to library: Sat Sep 21 08:26:15 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A P A V V V L G G Y L P S V H G I F L S V G I T W D N D R V T V F A D K I Y H F Y L K N A M Q Y V Y T P T Y Y M L N V T S A G I Y Y E P C T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A N C T G Y A A N V F A T D S N G H I P E G F S F N N W F L L S N D S T L L H G K V V S N Q P L L V N C L L A I P K I Y G L G Q F F S F N H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S G G G G S T T
B
G G G
T T
T T
B S S
S T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T M D G V C N G A A V D R A P E A L R F N I N D T S V I L A E G S I V L H T A L G T N L S F V C S N S S D P H L A T E V P Y Y C F L K V D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S B
S
S
G G G T
S T T S T T S
S S S S T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y N S T V Y K F L A V L P P T V R E I V I T K Y G D V Y V N G F G Y L H L G L L D A V T I N F T G H G T D D D V S G F W T I A S T N F V D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T S
T T
T T S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L I E V Q G T S I Q R I L Y C D D P V S Q L K C S Q V A F D L D D G F Y P I S S R N L L S H E Q P I S F V T L P S F N D H S F V N I T V S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S T
S S
S
T T
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence A F G G L S S A N L V A S D T T I N G F S S F C V D T R Q F T I T L F Y N V T N S Y G Y V S K S Q D S N C P F T L Q S V N D Y L S F S K F C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T B S
S S
T T S
S S S
T T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence V S T S L L A G A C T I D L F G Y P A F G S G V K L T S L Y F Q F T K G E L I T G T P K P L E G I T D V S F M T L D V C T K Y T I Y G F K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S S S S S
S S
S S
B
S S
T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence E G I I T L T N S S I L A G V Y Y T S D S G Q L L A F K N V T S G A V Y S V T P C S F S E Q A A Y V N D D I V G V I S S L S N S T F N N T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T S
T T T
S S
T T S
S
S S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence E L P G F F Y H S N D G S N C T E P V L V Y S N I G V C K S G S I G Y V P S Q Y G Q V K I A P T V T G N I S I P T N F S M S I R T E Y L Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
T T T T S
S S S
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence Y N T P V S V D C A T Y V C N G N S R C K Q L L T Q Y T A A C K T I E S A L Q L S A R L E S V E V N S M L T I S E E A L Q L A T I S S F N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S T T T T T T
T T S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence D G Y N F T N V L G A K R S V I E D L L F N K V V T N G L G T V D E D Y K R C S N G R S V A D L V C A Q Y Y S G V M V L P G V V D A E K L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T
S S S
T S T T S
T T
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence M Y S A S L I G G M A L G G I T A A A A L P F S Y A V Q A R L N Y L A L Q T D V L Q R N Q Q L L A E S F N S A I G N I T S A F E S V K E A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
S
S S
T T S
T T S T T T T T S
G G G

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence S Q T S K G L N T V A H A L T K V Q E V V N S Q G S A L N Q L T V Q L Q H N F Q A I S S S I D D I Y S R L D I L S A D V Q V D R L I T G R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S T T S T T S T T S
T T S S
S
S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence S A L N A F V A Q T L T K Y T E V Q A S R K L A Q Q K V N E C V K S Q S Q R Y G F C G G D G E H I F S L V Q A A P Q G L L F L H T V L V P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S T T T T T S S S T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence D F V N V L A I A G L C V N G E I A L T L R E P G L V L F T H E L Q T Y T A T E Y F V S S R R M F E P R K P T V S D F V Q I E S C V V T Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T S
T T S S S
S
S S S
B
T T T S S
T T S

. . . . . . . . . 1060 . . . .

Sequence N L T S D Q L P D V I P D Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	P	A	V	V	V	L	G	G	Y	L	P	S	V	H	G	I	F	L	S	V	G	I	T	W	D	N	D	R	V	T	V	F	A	D	K	I	Y	H	F	Y	L	K	N	A	M	Q	Y	V	Y	T	P	T	Y	Y	M	L	N	V	T	S	A	G	I	Y	Y	E	P	C	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S																	T	T						S	S	S															S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	N	C	T	G	Y	A	A	N	V	F	A	T	D	S	N	G	H	I	P	E	G	F	S	F	N	N	W	F	L	L	S	N	D	S	T	L	L	H	G	K	V	V	S	N	Q	P	L	L	V	N	C	L	L	A	I	P	K	I	Y	G	L	G	Q	F	F	S	F	N	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	G	G	G	G	S	T	T				B		G	G	G				T	T				T	T					B	S	S					S																			T	T									T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	M	D	G	V	C	N	G	A	A	V	D	R	A	P	E	A	L	R	F	N	I	N	D	T	S	V	I	L	A	E	G	S	I	V	L	H	T	A	L	G	T	N	L	S	F	V	C	S	N	S	S	D	P	H	L	A	T	E	V	P	Y	Y	C	F	L	K	V	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S			S	B								S							S		G	G	G	T		S	T	T	S						T	T	S									S	S	S	S	T	T				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	N	S	T	V	Y	K	F	L	A	V	L	P	P	T	V	R	E	I	V	I	T	K	Y	G	D	V	Y	V	N	G	F	G	Y	L	H	L	G	L	L	D	A	V	T	I	N	F	T	G	H	G	T	D	D	D	V	S	G	F	W	T	I	A	S	T	N	F	V	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												T	T								T	T	S					T	T																					T	T	S				S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	I	E	V	Q	G	T	S	I	Q	R	I	L	Y	C	D	D	P	V	S	Q	L	K	C	S	Q	V	A	F	D	L	D	D	G	F	Y	P	I	S	S	R	N	L	L	S	H	E	Q	P	I	S	F	V	T	L	P	S	F	N	D	H	S	F	V	N	I	T	V	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T								S		S										T		S	S			S												T	T									S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	A	F	G	G	L	S	S	A	N	L	V	A	S	D	T	T	I	N	G	F	S	S	F	C	V	D	T	R	Q	F	T	I	T	L	F	Y	N	V	T	N	S	Y	G	Y	V	S	K	S	Q	D	S	N	C	P	F	T	L	Q	S	V	N	D	Y	L	S	F	S	K	F	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S											T	T	B	S						S	S													T	T	S									S	S	S							T	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	V	S	T	S	L	L	A	G	A	C	T	I	D	L	F	G	Y	P	A	F	G	S	G	V	K	L	T	S	L	Y	F	Q	F	T	K	G	E	L	I	T	G	T	P	K	P	L	E	G	I	T	D	V	S	F	M	T	L	D	V	C	T	K	Y	T	I	Y	G	F	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			T	T										S	S	S	S	S																					S	S					S	S				B				S	S							T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	E	G	I	I	T	L	T	N	S	S	I	L	A	G	V	Y	Y	T	S	D	S	G	Q	L	L	A	F	K	N	V	T	S	G	A	V	Y	S	V	T	P	C	S	F	S	E	Q	A	A	Y	V	N	D	D	I	V	G	V	I	S	S	L	S	N	S	T	F	N	N	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S		S					T	T	S								T	T	T									S	S									T	T								S		S			S	S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	E	L	P	G	F	F	Y	H	S	N	D	G	S	N	C	T	E	P	V	L	V	Y	S	N	I	G	V	C	K	S	G	S	I	G	Y	V	P	S	Q	Y	G	Q	V	K	I	A	P	T	V	T	G	N	I	S	I	P	T	N	F	S	M	S	I	R	T	E	Y	L	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S						S						S							T	T					T	T	S																		S	S	S							S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Y	N	T	P	V	S	V	D	C	A	T	Y	V	C	N	G	N	S	R	C	K	Q	L	L	T	Q	Y	T	A	A	C	K	T	I	E	S	A	L	Q	L	S	A	R	L	E	S	V	E	V	N	S	M	L	T	I	S	E	E	A	L	Q	L	A	T	I	S	S	F	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T									T	T	S	T	T	T	T																				T	T												T	T	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	D	G	Y	N	F	T	N	V	L	G	A	K	R	S	V	I	E	D	L	L	F	N	K	V	V	T	N	G	L	G	T	V	D	E	D	Y	K	R	C	S	N	G	R	S	V	A	D	L	V	C	A	Q	Y	Y	S	G	V	M	V	L	P	G	V	V	D	A	E	K	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			T																					T	T			S	S	S				T					S	T	T	S											T	T							S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	M	Y	S	A	S	L	I	G	G	M	A	L	G	G	I	T	A	A	A	A	L	P	F	S	Y	A	V	Q	A	R	L	N	Y	L	A	L	Q	T	D	V	L	Q	R	N	Q	Q	L	L	A	E	S	F	N	S	A	I	G	N	I	T	S	A	F	E	S	V	K	E	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S		S		S			S	S														T	T	S					T	T	S	T																		T	T	T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	S	Q	T	S	K	G	L	N	T	V	A	H	A	L	T	K	V	Q	E	V	V	N	S	Q	G	S	A	L	N	Q	L	T	V	Q	L	Q	H	N	F	Q	A	I	S	S	S	I	D	D	I	Y	S	R	L	D	I	L	S	A	D	V	Q	V	D	R	L	I	T	G	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G	S	T	T	S														T	T	S									T	T	S			T	T	S	S		S								S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	S	A	L	N	A	F	V	A	Q	T	L	T	K	Y	T	E	V	Q	A	S	R	K	L	A	Q	Q	K	V	N	E	C	V	K	S	Q	S	Q	R	Y	G	F	C	G	G	D	G	E	H	I	F	S	L	V	Q	A	A	P	Q	G	L	L	F	L	H	T	V	L	V	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T	S	S				S	T	T	T	T	T	S	S	S											T	T												S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	D	F	V	N	V	L	A	I	A	G	L	C	V	N	G	E	I	A	L	T	L	R	E	P	G	L	V	L	F	T	H	E	L	Q	T	Y	T	A	T	E	Y	F	V	S	S	R	R	M	F	E	P	R	K	P	T	V	S	D	F	V	Q	I	E	S	C	V	V	T	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T						S		T	T						S		T	T	S	S	S		S							S	S	S				B				T	T	T					S	S			T	T	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.
Sequence	N	L	T	S	D	Q	L	P	D	V	I	P	D	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T					S	T	T