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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6u5wB_

Fold library idPDB HeaderMoleculeTitle
c6u5wB_3.30PDB header: transferaseChain: B: PDB Molecule: fatty acid synthase subunit beta;


Added to library: Sat Oct 19 09:05:25 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RPFQLTHGSIEHTLLVPNDLFFNYSQLKDEFIKTLPEPTEGFAGDDEPSSPAELYGKFIGFISNAQFPQI
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Known secondary structure (DSSP)






TT







TTTTTS



TTT
STTS

SSS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VELSLKDFESRFLDNNNDNIHSFAVKLLDDETYPTTIAKVKENIVKNYYKAVKSINKVESNLLYHCKHDA
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Known secondary structure (DSSP)
SS
TT
TT
SSS


TTT









TTS

TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLVAIFGGQGNTDDYFEELRELYTLYQGLIEDLLVSIAEKLNQLHPSFDKIYTQGLNILSWLKHPETTPD
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Known secondary structure (DSSP)


TTS
SS
SSGGGTTS
TT



STTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence QDYLLSVPVSCPVICVIQLCHYTITCKVLGLTPGEFRNSLKWSTGHSQGLVTAVTIAASDSWDSFLKNSL
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Known secondary structure (DSSP) STTT


S
TTTTT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TAVSLLLFIGSRCLSTYPRTSLPPTMLQDSLDNGEGRPSPMLSVRDLSIKQVEKFIEQTNSHLPREKHIA
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Known secondary structure (DSSP) S





TT




SS

TTS
TTS

 .........360.........370.........380.........390.........400.........410.........420
Sequence ISLINGARNLVLSGPPESLYGFNLNLRNQKAPMGLDQSRVPFSERKLKCSNRFLPIFAPFHSHLLADATE
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Known secondary structure (DSSP)
SSSS
S

TT

GGGS
STT





S

S

SSGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence LILDDVKEHGLSFEGLKIPVYDTFDGSDFQALKEPIIDRVVKLITELPVHWEEATNHKATHILDFGPGGV
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Known secondary structure (DSSP) TT





SS

B
SSS

BTTS
SS
STS
T



S
SS
GG
 .........500.........510.........520.........530.........540.........550.........560
Sequence SGLGVLTHRNKEGTGARIILAGTLDSNPIDDEYGFKHEIFQTSADKAIKWAPDWLKELRPTLVKNSEGKI
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Known secondary structure (DSSP) GSTGGGT
TT





TT

SGGGG


STTTT





T


TTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YVKTKFSQLLGRAPLMVAGMTPTTVNTDIVSASLNAGYHIELAGGGYFSPVMMTRAIDDIVSRIKPGYGL
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Known secondary structure (DSSP)
TTTS
S


TSTTT

BGGG
SSS
TT

 .........640.........650.........660.........670.........680.........690.........700
Sequence GINLIYVNPFMLQWGIPLIKDLREKGYPIQSLTIGAGVPSIEVATEYIEDLGLTHLGLKPGSVDAISQVI
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Known secondary structure (DSSP) TT
TTT
SSS


TS

S


S
 .........710.........720.........730.........740.........750.........760.........770
Sequence AIAKAHPTFPIVLQWTGGRGGGHHSFEDFHQPIIQMYSKIRRCSNIVLVAGSGFGSDEDTYPYLSGYWSE
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Known secondary structure (DSSP) TTSTTS


SSSS


S
STTTTSTT
SS

SSGGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence KFNYPPMPFDGVLFGSRVMTSKESHTSLAAKKLIVECKGVPDQQWEQTYKKPTGGIITVRSEMGEPIHKI
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Known secondary structure (DSSP) GGT





SBSGGGTTBTTS


S



GGG
GGGGTS
BTT

B
TTS
B
 .........850.........860.........870.........880.........890.........900.........910
Sequence ATRGVMFWKELDDTIFNLPKNKLLDALNKKRDHIIKKLNNDFQKPWFGKNANGVCDLQEMTYKEVANRLV
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Known secondary structure (DSSP)

TTTS
STTTT
SS
B

TT

GGGSB
 .........920.........930.........940.........950.........960.........970.........980
Sequence ELMYVKKSHRWIDVSLRNMYGDFLRRVEERFTSSAGTVSLLQNFNQLNEPEQFTADFFEKFPQAGKQLIS
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Known secondary structure (DSSP) TTTTS


S




S
S
GGGGGSTTSSSGGGTSB

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EEDCDYFLMLAARPGQKPVPFVPVLDERFEFFFKKDSLWQSEDLESVVDEDVQRTCILHGPVASQYTSKV
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Known secondary structure (DSSP) ST
TTS


SSB


STTTTT
SGGGT
GGGSSS

GGG


B

TGGGGT

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DEPIGDILNSIHEGHIARLIKEEYAGDESKIPVVEYFGGKKPASVSATSVNIIDGNQVVYEIDSELPNKQ
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Known secondary structure (DSSP) SB
STT
STTS
B
SS
SSS
SS

SSS
SS



SS

SSS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EWLDLLAGTELNWLQAFISTDRIVQGSKHVSNPLHDILTPAKHSKVTIDKKTKKLTAFENIKGDLLPVVE
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Known secondary structure (DSSP)
SS


SSSS

ST


TT
TTTTTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence IELVKPNTIQLSLIEHRTADTNPVALPFLYKYNPADGFAPILEIMEDRNERIKEFYWKLWFGSSVPYSND
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Known secondary structure (DSSP) TTT

STT



SS
SSS


TT
TTS




 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence INVEKAILGDEITISSQTISEFTHAIGNKCDAFVDRPGKATLAPMDFAIVIGWKAIIKAIFPKSVDGDLL
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Known secondary structure (DSSP)

SSS





T


TTTS

TTS

B

TTGGGS
STTS
S
ST
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence KLVHLSNGYKMITGAAPLKKGDVVSTKAEIKAVLNQPSGKLVEVVGTIYREGKPVMEVTSQFLYRGEYND
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Known secondary structure (DSSP) T
TT



BTT
TTTTS



 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence YCNTFQKVTETPVQVAFKSAKDLAVLRSKEWFHLEKDVQFDVLTFRCESTYKFKSANVYSSIKTTGQVLL
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Known secondary structure (DSSP)
SS





S
TT





SSSSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence ELPTKEVIQVGSVDYEAGTSYGNPVTDYLSRNGKTIEESVIFENAIPLSSGEELTSKAPGTNEPYAIVSG
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Known secondary structure (DSSP)
TTS
SSBSS
S



S

SSTT

S
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DYNPIHVSRVFAAYAKLPGTITHGMYSSASIRALVEEWAANNVAARVRAFKCDFVGMVLPNDTLQTTMEH
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Known secondary structure (DSSP)


TTTT
TT
SSS


TTTT
GGG
S


TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence VGMINGRKIIKVETRNVETELPVLIGEAEIEQPTTTYVFTGQGSQEQGMGMELYNSSEVAREVWDKADRH
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Known secondary structure (DSSP) TTTTT








TT


TTTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FVNNYGFSILDIVQNNPNELTIHFGGAKGRAIRDNYIGMMFETIGEDGALKSEKIFKDIDETTTSYTFVS
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Known secondary structure (DSSP) TTTTS

S

S

S




TT




S
TT
SSS


 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence PTGLLSATQFTQPALTLMEKAAYEDIKSKGLIPSDIMFAGHSLGEYSALSSLANVMPIESLVDVVFYRGM
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Known secondary structure (DSSP) SS
GGGSTT


SS
SSSTTTTTS

S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence TMQVAVPRDELGRSNYGMVAVNPSRVSATFDDSALRFVVDEVANKTKWLLEIVNYNVENQQYVAAGDLRA
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Known secondary structure (DSSP) TS


TTS

S

TT

S


TTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LDTLTNVLNVLKINKIDIVKLQEQMSIEKVKEHLYEIVDEVAAKSLAKPQPIDLERGFAVIPLKGISVPF
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Known secondary structure (DSSP)


TTTTTTTS
TS
SS





SS
SS



T
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence HSSYLMSGVKPFQRFLCKKIPKSSVKPQDLIGKYIPNLTAKPFELTKEYFQSVYDLTKSEKIKSILDNWE
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Known secondary structure (DSSP) TSGGGGGGS
GGG

GGGTTTTB

SSS
S






STTT
 ...
Sequence QYE
Predicted secondary structure


SS confidence


Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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