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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6tnfB_

Fold library idPDB HeaderMoleculeTitle
c6tnfB_3.80PDB header: dna binding proteinChain: B: PDB Molecule: fanconi anemia complementation group i;


Added to library: Sat Feb 22 08:32:22 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ELATLFVEVIKRGSLSNGKSLELFSTVTALSKESLAYGKELNGEEKKQLINTLCSSKWDPQCVIHLANMF
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Known secondary structure (DSSP)


TTSSSSS


TTTTTGGGG









S




TT


GGGSSSS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RDIPSGEELQFVVEKVLRMFSKLDLQEIPPLVYQLLLLSAKSKKTVLEGIISFFNQLDKRQKETVPLDQL
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Known secondary structure (DSSP)


TSSTTTTSSSSSSST




S


TTSSTTTTTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence RHVEGTVILHIVSAINQDIGEELIKHLKTEQQKDPGKALCPFSVSLLLSTAVKHRLQEQIFDFLKTSITR
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Known secondary structure (DSSP)


TTSSTTTSS

TTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SCKDLQILQASKFLQDLCPQQYDVTAVILEVVKNSAFGWDHVTQGLVDLGFSLMESYEPMPAQQACKLGA
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Known secondary structure (DSSP) TTSSSSSS
S
GGGGTT


SSTTTTTTTSTT



 .........290.........300.........310.........320.........330.........340.........350
Sequence SILLETFKVHEPIRSDILEQVLNRVLTKAASPVSHFIDLLSNIVVSAPLVLQNSSSRVTETFDNLSFLPI
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Known secondary structure (DSSP) SSTTSTTTTTS
SS

SS


SSTTTTTTT

TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DTVQGLLRAVQPLLKVSMSVRDSLILVLQKAIFSRQLDARKAAVAGFLLLLRNFKILTQVQADVHEAFCL
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Known secondary structure (DSSP) SSSTSS

TTTS




S
SS


 .........430.........440.........450.........460.........470.........480.........490
Sequence EILGSLRRCLSQQADVRLMLYEGFYDVLRRNSQLASSIMETLLSQIKQYYLPQQDLLPPLKLEGCIMAQG
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Known secondary structure (DSSP) GGGGSSSTTTTTTSTT
S


SS
SSSS
GGGSSGGGT
 .........500.........510.........520.........530.........540.........550.........560
Sequence DQIFLQEPLAHLLCCIQHCLAWYKSTVHLEEEDVGFEQNFEEMLESVTRRMIKSSGVGVKNNIYAIQVMG
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Known secondary structure (DSSP) TS








T


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence ICEVLIEYNFKIGNFSKNKFEDVLGLFTCYNKLSEISFLSMGFVSTLLTALFRDNAQSHEESLAVLRSST
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Known secondary structure (DSSP)
SS






TTTTTTSSS

SS
STTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence EFMRYAVSVALQKVQQLEEMGQTDGPDGQNPEKMFQNLCKITRVLLWRYTSIISLLCLEGLLRIFNTMQQ
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Known secondary structure (DSSP) STT
S
SSTTSSST

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence LYAARIPQFLQALDITDGDAEEADINVTEKAAFQIRQFQRSLVNQLSSAEDDFNSKETQLLITILSTLSK
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Known secondary structure (DSSP) T
SSS
SSS
S

T

STT
ST
 .........780.........790.........800.........810.........820.........830.........840
Sequence LLDPGSQQFLQFLTWTVKICKENALEDLSCCKGLLTLLFSLHVLYKSPVSLLRELAQDIHACLGDIDQDV
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Known secondary structure (DSSP) TT
SSTS


TTTTSSTT

SS

BS
SSSSSBS
 .........850.........860.........870.........880.........890.........900.........910
Sequence EIESRSHFAIVNVKTAAPTVCLLVLGQADKVLEEVDWLIKRLTIQTQALEKGVILQLGTLLTVFHELVQT
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Known secondary structure (DSSP)
SS
SSSSTTSSTTTTT


SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ALPAGSCVDSLLRSLSKTYAILTSLIKHYIQACRSTSNTVPGRLEKLVKLSGSHLTPQCYSFITYVQRDT
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Known secondary structure (DSSP)
TTTTT
TTS
SSTTTT


S
 .........990.........1000.........1010....
Sequence KPIPNLIFAIEQYEKFLIHLSKKSKVNLMQYMKL
Predicted secondary structure


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Known secondary structure (DSSP)



GGGS
S
SS

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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