Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6sn1B_

Fold library idPDB HeaderMoleculeTitle
c6sn1B_2.54PDB header: rna binding proteinChain: B: PDB Molecule: integrator complex subunit 14;


Added to library: Sat Jul 25 08:31:29 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PTVVVMDVSLSMTRPVSIEGSEEYQRKHLAAHGLTMLFEHMATNYKLEFTALVVFSSLWELMVPFTRDYN
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)

SGGGGSBS
TT
S


B
TT

SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TLQEALSNMDDYDKTCLESALVGVCNIVQQEWGGAIPCQVVLVTDGCLGIGRGSLRHSLATQNQRSESNR
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTT








SSS

S


SSSS
TSSTTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FPLPFPFPSKLYIMCMANLEELQSTDSLECLERLIDLNNGEGQIFTIDGPLCLKNVQSMFGKLIDLAYTP
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)


S
SSSSS
TTTTTT


SS

S


 .........220.........230.........240.........250.........260.........270.........280
Sequence FHAVLKCGHLTADVQVFPRPEPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIALNKE
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) TTS



B


TTT

S
B


S
S


S



TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GDEVGTNSANQIAGKIPNFCVLLHGSLKVEGMVAIVQLGPEWHGMLYSQADSKKKSNLMMSLFEPGPEPL
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP) S

TT

TS

TTT

STTS




SSS
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence PWLGKMAQLGPISDAKENPYGEDDNKSPFPLQPKNKRSYAQNVTVWIKPSGLQTDVQKILRNARKLPEKT
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) GGG

GGG


GGGSSS
TT
TTS


S
S


SS

GGGS




SSTSTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QTFYKELNRLRKAALAFGFLDLLKGVADMLERECTLLPETAHPDAAFQLTHAAQQLKLASTGTSEYAAYD
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) T
T

TTS
S
SSSS
SSS
 .........500...
Sequence QNITPLHTDFSGS
Predicted secondary structure












SS confidence












Known secondary structure (DSSP)









S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D