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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6sliB_

Fold library idPDB HeaderMoleculeTitle
c6sliB_3.38PDB header: membrane proteinChain: B: PDB Molecule: raga protein;


Added to library: Sat May 23 11:17:55 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVMTTSGDPTAVASVEIHGTGSLGASSAPLYIVDG
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Known secondary structure (DSSP)


SSS

GGGSS

SSS
GGGGGTT
STT




TT


SS


SSS



TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence MQTSLDVVATMNPNDFESMSVLKDASATSIYGARAANGVVFIQTKKGKMSERGRITFNASYGISQILNTK
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Known secondary structure (DSSP)

TTS
GGG
STTTSSS

SSGGG






SSS

G
 .........150.........160.........170.........180.........190.........200.........210
Sequence PLDNMMTGDELLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSLKDEYGKTLFPVDFNHDADWLKA
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Known secondary structure (DSSP) GGGSB

TTSS
SS

TTTTTTTTTTSTTTTTTBTTTB
SB
SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LFKTAPTSQGDISFSGGSQGTSYYASIGYFDQEGMAREPANFKRYSGRLNFESRINEWLKVGANLSGAIA
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Known secondary structure (DSSP) B


SS
SBSS


SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NRRSADYFGKYYMGSGTFGVLTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKMRPFSSESHQANV
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Known secondary structure (DSSP)


STTS

TT
SS
TTB

B
TTS
B
S

SS
SS

TS
 .........360.........370.........380.........390.........400.........410.........420
Sequence NGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYDSTPLGERRERAYRDVSKSFTNTAEYKFSIDEK
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Known secondary structure (DSSP)

STT
TT
TTSS
S


SSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence HDLTALMGHEYIEYEGDVIGASSKGFESDKLMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDKWM
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Known secondary structure (DSSP)





TT


TTS


STT





TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence YIDFSVRNDQSSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRLKMSYGTTGNSEIGNYNHQALVT
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Known secondary structure (DSSP) TTS
TTS

B

TTTTTT


SS



B

S
TTTTS

 .........570.........580.........590.........600.........610.........620.........630
Sequence VNNYTEDAMGLSISTAGNPDLSWEKQSQFNFGLAAGAFNNRLSAEVDFYVRTTNDMLIDVPMPYISGFFS
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Known secondary structure (DSSP)


SSSS






TT


B
TTS
SS




GGGS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence QYQNVGSMKNTGVDLSLKGTIYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTGTIWEIGYPNSFY
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Known secondary structure (DSSP)





SSS



SSS
STTTTSSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence MAEYAGIDKKTGKQLWYVPGQVDAKVTTSQYSADLETRIDKSVTPPITGGFSLGASWKGLSLDADFAYIV
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Known secondary structure (DSSP)


TTT


TT





SS

GGG

S

SS
S

SSSB

 .........780.........790.........800.........810.........820.........830.........840
Sequence GKWMINNDRYFTENGGGLMQLNKDKMLLNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTYV
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Known secondary structure (DSSP) S
T
SSS
TTS

BGGGGG


SS

SSSS

TT



SSSSS



B
 .........850.........860.........870.........880.........890.........900
Sequence LPNSLFAGQNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNSKQYVAGIQLSF
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Known secondary structure (DSSP)

GGG
SS
TT








SSSS
TTS
S
S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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