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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6sc2A_

Fold library idPDB HeaderMoleculeTitle
c6sc2A_3.90PDB header: motor proteinChain: A: PDB Molecule: o6-alkylguanine-dna alkyltransferase mutant,dync2h1 variant


Added to library: Sat Sep 7 10:04:39 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KLFIFTTTQNYFGLMSELWDQPLLCNCLEINNFLDDGNQMLLRVQRSDAGISFSNTIEFGDTKDKVLVFF
Predicted secondary structure

















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Known secondary structure (DSSP)

S
SS


S


STT
SS

TTS




SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KLRPEVITDENLHDNILVSSMLESPISSLYQAVRQVFAPMLLKDQEWSRNFDPKLQNLLSELEAGLGIVL
Predicted secondary structure


















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Known secondary structure (DSSP) SSSS

SSS
TTSSS
TTS

TT

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence RRSKERANYFKELFETIAREFYNLDSLSLLEVVDLVETTQDVVDDVWRQTEHDHYPESRMLHLLDIIGGS
Predicted secondary structure











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Known secondary structure (DSSP) T

TTGGG

T

SS
S


 .........220.........230.........240.........250.........260.........270.........280
Sequence FGRFVQKKLGTLNLWEDPYYLVKESLKAGISICEQWVIVCNHLTGQVWQRYVPHPWKNEKYFPETLDKLG
Predicted secondary structure


















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Known secondary structure (DSSP) TT
TTSS
TS

S

S





 .........290.........300.........310.........320.........330.........340.........350
Sequence KRLEEVLAIRTIHEKFLYFLPASEEKIICLTRVFEPFTGLNPVQYNPYTEPLWKAAVSQYEKIIAPAEQK
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TGGGTTT

SS

TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence IAGKLKNYISEIQDSPQQLLQAFLKYKELVKRPTISKELMLERETLLARLVDSIKDFRLDFENRSEVVNS
Predicted secondary structure







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Known secondary structure (DSSP) TS
S

TSTT

T
 .........430.........440.........450.........460.........470.........480.........490
Sequence IVWVRQLELKVDDTIKIAEALLSDLPGFRCFHQSAKDLLDQLKLYEQEQFDDWSRDIQSGLSDSRSGLCI
Predicted secondary structure










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Known secondary structure (DSSP) TTS
TSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence EASSRIMELDSNDGLLKVHYSDRLVILLREVRQLSALGFVIPAKIQQVANIAQKFCKQAIILKQVAHFYN
Predicted secondary structure



















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Known secondary structure (DSSP)

SSTTTTT


S
TT



 .........570.........580.........590.........600.........610.........620.........630
Sequence SIDQQMIQSQRPMMLQSALAFEQIIKNSKAGSGGKSQITWDNPKELEGYIQKLQNAAERLATENRKLRKW
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TTT

TTT
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence HTTFCEKVVVLMNIDLLRQQQRWKDGLQELRTGLATVEAQGFQASDMHAWKQHWNHQLYKALEHQYQMGL
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TT

TTT
TTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence EALNENLPEINIDLTYKQGRLQFRPPFEEIRAKYYREMKRFIGIPNQFKGVGEAGDESIFSIMIDRNASG
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Known secondary structure (DSSP) TTTSS

TTS
TSTTS


SSTTS
STTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence FLTIFSKAEDLFRRLSAVLHQHKEWIVIGQVDMEALVEKHLFTVHDWEKNFKALKIKGKEVERLPSAVKV
Predicted secondary structure







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Known secondary structure (DSSP) S








TTS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence DCLNINCNPVKTVIDDLIQKLFDLLVLSLKKSIQAHLHEIDTFVTEAMEVLTIMPQSVEEIGDANLQYSK
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) SS
TTSSS

GGGTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LQERKPEILPLFQEAEDKNRLLRTVAGGGLETISNLKAKWDKFELXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure









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Known secondary structure (DSSP) TTTTT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure
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Known secondary structure (DSSP)



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure
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Known secondary structure (DSSP) T

TT
TTTS


STTTSTT

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLID
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Known secondary structure (DSSP) T
GGGG
GGG

S
STGGG
B


 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YEDSQSRTMKLIKDWKDIVNQVGDNRCLLQSLKDSPYYKGFEDKVSIWERKLAELDEYLQNLNHIQRKWV
Predicted secondary structure










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Known secondary structure (DSSP)

SSS




TTSGGGGGT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YLEPIFGRGALPKEQTRFNRVDEDFRSIMTDIKKDNRVTTLTTHAGIRNSLLTILDQLQRCQRSLNEFLE
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Known secondary structure (DSSP) S



BGGGTTSSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence EKRSAFPRFYFIGDDDLLEILGQSTNPSVIQSHLKKLFAGINSVCFDEKSKHITAMKSLEGEVVPFKNKV
Predicted secondary structure




























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Known secondary structure (DSSP) SGGGGSS

SS
STTTSSS


B


TTSS

SS


 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence PLSNNVETWLNDLALEMKKTLEQLLKECVTTGRSSQGAVDPSLFPSQILCLAEQIKFTEDVENAIKDHSL
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)

SSSTSSS



TTTS



 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence HQIETQLVNKLEQYTNIDTSSEDPGNTESGILELKLKALILDIIHNIDVVKQLNQIQVHTTEDWAWKKQL
Predicted secondary structure












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Known secondary structure (DSSP) TT
S
SS


ST

STTSTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence RFYMKSDHTCCVQMVDSEFQYTYEYQGNASKLVYTPLTDKCYLTLTQAMKMGLGGNPYGPAGTGKTESVK
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SS confidence





































































Known secondary structure (DSSP)
TTS

SS
B








S






TTT



SSSSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ALGGLLGRQVLVFNCDEGIDVKSMGRIFVGLVKCGAWGCFDEFNRLEESVLSAVSMQIQTIQDALKNHRT
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Known secondary structure (DSSP) T





TT

T


SSS
TT
S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence VCELLGKEVEVNSNSGIFITMNPAGKGYGGRQKLPDNLKQLFRPVAMSHPDNELIAEVILYSEGFKDAKV
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Known secondary structure (DSSP) B

SSSS

B

TT






SSS
S




TTS





STT
S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LSRKLVAIFNLSRELLTPQQHYDWGLRALKTVLRGSGNLLRQLNKSGTTQNANESHIVVQALRLNTMSKF
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Known secondary structure (DSSP) S


TT


SSS


STTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence TFTDCTRFDALIKDVFPGIELKEVEYDELSAALKQVFEEANYEIIPNQIKKALELYEQLCQRMGVVIVGP
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SS confidence





































































Known secondary structure (DSSP)
SSS








TT




S


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence SGAGKSTLWRMLRAALCKTGKVVKQYTMNPKAMPRYQLLGHIDMDTREWSDGVLTNSARQVVREPQDVSS
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Known secondary structure (DSSP) TTSSSSTTSS


TTTS
T
TTTT

S
SS

 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence WIICDGDIDPEWIESLNSVLDDNRLLTMPSGERIQFGPNVNFVFETHDLSCASPATISRMGMIFLSDEET
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SS confidence





































































Known secondary structure (DSSP)
S


GGGTTTSSSS

TTS


S


S

TT

TTS


SSS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence DLNSLIKSWLRNQPAEYRNNLENWIGDYFEKALQWVLKQNDYVVETSLVGTVMNGLSHLHGCRDHDEFII
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)
STS
SSS


SS


TT
TT

S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence NLIRGLGGNLNMKSRLEFTKEVFHWARESPPDFHKPMDTYYDSTRGRLATYVLKKPEDLTADDFSNGLTL
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Known secondary structure (DSSP) TTSS
TSS


S

SSTT




TTT







B





SSTTSSSSS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence PVIQTPDMQRGLDYFKPWLSSDTKQPFILVGPEGCGKGMLLRYAFSQLRSTQIATVHCSAQTTSRHLLQK
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Known secondary structure (DSSP)


B
TTTSSTT




SSSST
SS


TT

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LSQTCMVISTNTGRVYRPKDCERLVLYLKDINLPKLDKWGTSTLVAFLQQVLTYQGFYDENLEWVGLENI
Predicted secondary structure








































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Known secondary structure (DSSP) TS

SSS
TT
S

SSSS


SSS

STTT
S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence QIVASMSAGGRLGRHKLTTRFTSIVRLCSIDYPEREQLQTIYGAYLEPVLHKNLKNHSIWGSSSKIYLLA
Predicted secondary structure
























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Known secondary structure (DSSP)

S
STT




S




TTSSTTSSSS
ST
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence GSMVQVYEQVRAKFTVDDYSHYFFTPCILTQWVLGLFRYDLEGGSSNHPLDYVLEIVAYEARRLFRDKIV
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Known secondary structure (DSSP)

TTT
TT



TGGGSB



SS



GGG

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence GAKELHLFDIILTSVFQGDWGSDILDNMSDSFYVTWGARHNSGAPGQPLPPHGKPLGKLNSTDLKDVIKK
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Known secondary structure (DSSP) SSSS
SS
S
TT


BSSS
TT






S

TT
S
BB


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence GLIHYGRDNQNLDILLFHEVLEYMSRIDRVLSFPGGSLLLAGRSGVGRRTITSLVSHMHGAVLFSPKISR
Predicted secondary structure






















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Known secondary structure (DSSP) SS







TSTT


SSS
STT





S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence GYELKQFKNDLKHVLQLAGIEAQQVVLLLEDYQFVHPTFLEMINSLLSSGEVPGLYTLEELEPLLLPLKD
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Known secondary structure (DSSP) S

SS


GGG

STTTSS
TT
S
STTTGGG
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence QASQDGFFGPVFNYFTYRIQQNLHIVLIMDSANSNFMINCESNPALHKKCQVLWMEGWSNSSMKKIPEML
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Known secondary structure (DSSP)


S
STT
GGGTS
GGGGTTS




T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence FSEVDPDFLKSFLLIHESCKAYGATPSQYMTFLHVYSAISSSKKKELLKRQSHLQAGVSKLNEAKALVDE
Predicted secondary structure






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Known secondary structure (DSSP) T


GGG


TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence LNRKAGEQSVLLETIKAAEVLINQLDREHKRWNAQVVEITEELATLPKRAQLAAAFITYLSAAPESLRKT
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)


STTTSTTSS
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence CLEEWTKSAGLEKFDLRRFLCTESEQLIWKSEGLPSDDLSIENALVILQSRVCPFLIDPSSQATEWLKTH
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) T

S

S

TTT


STT

SS
SST
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence LKDSRLEVINQQDSNFITALELAVRFGKTLIIQEMDGVEPVLYPLLRRDLVAQGPRYVVQIGDKIIDYNE
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) T
SS

SS
TTTT

S

STTTT

TTTT

T
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence EFRLFLSTRNPNPFIPPDAASIVTEVNFTTTRSGLRGQLLALTIQHEKPDLEEQKTKLLQQEEDKKIQLA
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) T
S
SSS


SSTTSS




 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence KLEESLLETLATSQGNILENKDLIESLNQTKASSALIQESLKESYKLQISLDQERDAYLPLAESASKMYF
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) GGGSSSS
TTTSTTTS
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence IISDLSKINNMYRFSLAAFLRLFQRALQNKQDSENTEQRIQSLISSLQHMVYEYICRCLFKADQLMFALH
Predicted secondary structure











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Known secondary structure (DSSP) TTTTTSTT



STT


S
STTS
TTS
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence FVRGMHPELFQENEWDTFTGVDQLPSWIDQERSWAVATLKIALPSLYQTLCFEDAALWRTYYNNSMCEQE
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)
TTSS
SS
TT


S

SS


TT

STT
SSTTS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence FPSILAKKVSLFQQILVVQVLRPDRLQSAMALFACKTLGLKEVSPLPLNLKRLYKETLEIEPILIIISPG
Predicted secondary structure


























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Known secondary structure (DSSP)

GGGTTTS

SSS

S
SS




TTTTTTT

TTS


TT
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence ADPSQELQELANAERSGECYHQVAMGQGQADLAIQMLKECARNGDWLCLKNLHLVVSWLPVLEKELNTLQ
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)




S





TT




TTT
TTT

 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence PKDTFRLWLTAEVHPNFTPILLQSSLKITYESPPGLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWF
Predicted secondary structure



























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Known secondary structure (DSSP)

SS




SS

TS



SSS


SS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence HAACQERRNYIPQGWTKFYEFSLSDLRAGYNIIDRLFDGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVL
Predicted secondary structure


























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Known secondary structure (DSSP) GGGSTTTT
SS




SSSS


TTGGG

S
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence QSYLKQFFIFPYSVSLPQSCSILDYRAVIEKIPEDDKPSFFGLPANIARSSQRMISSQVISQLRILGRDR
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) T



TTT



SS
S
SS

GGGTT

STT

 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence EIWSNELSPVLNLWKKLNQNSNLIHQKVPPPNDRQGSPILSFIILEQFNAIRLVQSVHQSLAALSKVIRG
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TTSSSSS
TTTTT








SSTTTTSS
 .........3720.........3730.........3740.........3750.........3760.........3770.........3780
Sequence TTLLSSEVQKLASALLNQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSEL
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S



STT






SSTTS
TTTS
GGG
 .........3790.........3800.........3810.........3820.........3830.........3840.........3850
Sequence FHPDTFLNALRQETARAVGRSVDSLKFVASWKGRLQEAKLQIKISGLLLEGCSFDGNQLSENQLDSPSVS
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) SSTS
GGGSSS

SSSS



SSTT


TT

S
 .........3860.........3870.........3880.........3890.........3900.........3910....
Sequence SVLPCFMGWIPQDACGPYSPDECISLPVYTSAERDRVVTNIDVPCGGNQDQWIQCGAALFLKNQ
Predicted secondary structure



























SS confidence































































Known secondary structure (DSSP)


TTS

SS
GGG
BSSTT







S

TT
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
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