Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6s6vB_

Fold library idPDB HeaderMoleculeTitle
c6s6vB_3.50PDB header: dna binding proteinChain: B: PDB Molecule: nuclease sbccd subunit d;


Added to library: Sat Sep 7 08:26:12 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNL
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)




BT
BSSS
B
TT


S

BSSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence QQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITE
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TTSS




SSS
TSTTTGGGT

SS




TTS






TTTS


 .........150.........160.........170.........180.........190.........200.........210
Sequence KQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TTSS





SS



SSS

SSTTT
S


GGGS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLAS
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)
SSSS

BSTT
TT



SS

SSSS
SS

TT


SS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASRETLSEL
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) GGGSS


SS


SSGGGS
TTSSS

TT





SSS
 .........360.........370.........380.....
Sequence SVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLA
Predicted secondary structure





SS confidence


































Known secondary structure (DSSP)
TTT

TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D