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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rflB_

Fold library idPDB HeaderMoleculeTitle
c6rflB_2.76PDB header: viral proteinChain: B: PDB Molecule: dna-dependent rna polymerase subunit rpo132;


Added to library: Sat Dec 14 08:47:33 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EMDQRLGYKFLVPDPKAGVFYRPLHFQYVSYSNFILHRLHEILTVKRPLLSFKNNTERIMIEISNVKVTP
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Known secondary structure (DSSP)
SSS
BTTTTBS
GGG


TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence PDYSPIIASIKGKSYDALATFTVNIFKEVMTKEGISITKISSYEGKDSHLIKIPLLIGYGNKNPLDTAKY
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Known secondary structure (DSSP)
SS
S




SSS
SSS
S
B

TTS

SS


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVPNVIGGVFINKQSVEKVGINLVEKITTWPKFRVVKPNSFTFSFSSVSPPNVLPTRYRHYKISLDISQL
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Known secondary structure (DSSP)

TT




TTS


SS
SS
TT

TTSSS

SS
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence EALNISSTKTFITVNIVLLSQYLSRVSLEFIRRSLSYDMPPEVVYLVNAIIDSAKRITESITDFNIDTYI
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Known secondary structure (DSSP) T


SSSS

S
S
STSS

SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence NDLVEAEHIKQKSQLTINEFKYEMLHNFLPHMNYTPDQLKGFYMISLLRKFLYCIFHTSRYPDRDSMVCH
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Known secondary structure (DSSP) TT

S
STTTTTS
TTTSS


GGGS

TT
STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence RILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVLTTPGLNHAFSSLLSGKFKKSDGSYR
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Known secondary structure (DSSP)

SSTT


TTSSS

STT

SS
S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence THPHYSWMQNISIPRSVGFYPVRKYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEK
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Known secondary structure (DSSP)

TT
TTTTT




S

GGGBTTB
SS



SSTTTTTB
SS




 .........500.........510.........520.........530.........540.........550.........560
Sequence KICEYIRSYYKDDISYFETGFPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE
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Known secondary structure (DSSP) TS
GGGGB

SSSTT
GGGTTSSS
TT

SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTFSNVCESVQKF
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Known secondary structure (DSSP)

TT
BTTSSBTTTT
TTSTTTGGG

STTSTS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence RMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLMY
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Known secondary structure (DSSP) TS
TTTGGG
S


GGGGS
TTTTTSS
TTSS
TTB
B


S
TTT

S
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence PERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVEIPLENF
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Known secondary structure (DSSP)



S
TTTTTS


S

TTTS
SSTTTT

TTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence NNKERDRSNAYSKLESNGLVRLNAFLESGDAMARNISSVSEKYTDMYKSRVERVQVELTDKVKVRVLTMK
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Known secondary structure (DSSP) T
S



SSS
TTB
TTSBB
TT

TT
BSB







B


SS

SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ERRPILGDKFTTRTSQKGTVAYVADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPY
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Known secondary structure (DSSP)


TT

TT



TTSS
B
TT



S
TTT
T

B
 .........920.........930.........940.........950.........960.........970.........980
Sequence NNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNPKLSDEELSDKIFCEKILYDPETDKPYASKVFFGPI
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Known secondary structure (DSSP)
SS

B



SS

S

S


SSTTS


TTTT
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YYLRLRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQD
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Known secondary structure (DSSP) BS

GGGT



SS

B
TTT
SB


TTTT





TT
SS

GGG


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VYVCENCGDIAAQIKGINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERRPPSFYKPL
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Known secondary structure (DSSP)

TTT

B
TT
TT








TT

















 .........
Sequence DKVDLKPSF
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Known secondary structure (DSSP)









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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