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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rc9A_

Fold library idPDB HeaderMoleculeTitle
c6rc9A_1.94PDB header: cell adhesionChain: A: PDB Molecule: adhesin p1;


Added to library: Sat Nov 7 08:32:38 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NAINPRLTPWTYRNTSFSSLPLTGENPGAWALVRDNSAKGITSQQTTYDPTRTEAALTASTTFALRRYDL
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Known secondary structure (DSSP)

S
TT


BTTTTB

TTS

TT














T
 .........80.........90.........100.........110.........120.........130.........140
Sequence AGRALYDLDFSKLNPQTPTRDQTGQITFNPFGGFGLSGAAPQQWNEVKNKVPVEVAQDPSNPYRFAVLLV
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Known secondary structure (DSSP) TS

TTT




B
B
TTS
B
TTT
B
SS

TT
TTTTTS
TT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PRSVVYYEQLQRGLGLPQQRTESGSTTGAMFGLKVKNAEADTAKSNEKLQGASGQSTQRGKVKALKIEVK
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Known secondary structure (DSSP)
GGGG








S





S


TT






GGGGGGS

B


S
SS



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence KKSDSGQLQLEKNDLANAPIKRSEESGQSVQLKADDFGTALSPTPWRPWLATEQIHKDLPKWSASILILY
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Known secondary structure (DSSP)

S






STTS

S

TT



GGGG










SS
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DAPYARNRTAIDRVDHLDPKAMTANYPPSWRTPKWNHHGLWDWKARDVLLQTTGFFNPRRHPEWFDGGQT
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Known secondary structure (DSSP)
TTSSB


TTS
GGGGSTT

TTTTT


SSS
TTT
GGG
TTGGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence VADNEKTGFDVDNSENTKQGFQKEADSDKSAPIALPFEAYFANIGNLTWFGQALLVFGGNGHVTKSAHTA
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Known secondary structure (DSSP) G
SS


SB



SSGGGTT
B

SSSS







T


TT



STTT

TT

 .........430.........440.........450.........460.........470.........480.........490
Sequence PLSIGVFRVRYNATGTSATVTGWPYALLFSGMVNKQTDGLKDLPFNNNRWFEYVPRMAVAGAKFVGRELV
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Known secondary structure (DSSP)

B

SSSS
TTT

GGG
SS
SS
S



TT





TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LAGTITMGDTATVPRLLYDELESNLNLVAQGQGLLREDLQLFTPYGWANRPDLPIGAWSSSSSSSHNAPY
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Known secondary structure (DSSP)

B

TT
S
B
TT
GGG
TSS


S
B


TTBBS
S


GGGSS
TT

STBTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence YFHNNPDWQDRPIQNVVDAFIKPWEDKNGKDDAKYIYPYRYSGMWAWQVYNWSNKLTDQPLSADFVNENA
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Known secondary structure (DSSP) B
B

GGG
B


TTTTTBTT
S





S



SSTT

S



B
 .........640.........650.........660.........670.........680.........690.........700
Sequence YQPNSLFAAILNPELLAALPDKVKYGKENEFAANEYERFNQKLTVAPTQGTNWSHFSPTLSRFSTGFNLV
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Known secondary structure (DSSP) SS


S
SS



GGGS

SST

SS



TT

GGGGGGG
S



 .........710.........720.........730.........740.........750.........760.........770
Sequence GSVLDQVLDYVPWIGNGYRYGNNHRGVDDITAPRSFLPTFSNIGVGLKANVQATLNLQLWTGAGWRNDKA
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Known secondary structure (DSSP) SB
TTTS
BTTTT

GGGSSS






SS

TTSS

S




SS





 .........780.........790.........800.........810.........820.........830.........840
Sequence SSGQSDENHTKFTSATGMDTSAGNPDSLKQDSGDSLTTQDGNAIDQQEATNYTNLPPNLTPTADWPNALS
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Known secondary structure (DSSP) TTSSS

SSS



TT
TT








SS


STTT

SS
SB
S
S

STT


TT
GG
 .........850.........860.........870.........880.........890.........900.........910
Sequence FTNKNNAQRAQLFLRGLLGSIPVLVNRSGSDSNKFQATDQKWSYTDLHSDQTKLNLPAYGEVNGLLNPAL
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Known secondary structure (DSSP) G



T


SB

BTTB


GGG


S
GGGG


SSSSBTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence VETYFGNTRAGGSGSNTTSSPGIGFKIPEQNNDSKATLITPGLAWTPQDVGNLVVSGTTVSFQLGGWLVT
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Known secondary structure (DSSP)
TT
SSSSS
S


B




TT


S



TT
B


TTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FTDFVKPRAGYLGLQLTGLDASDATQRALIWAPRPWAAFRGSWVNRLGRVESVWDLKGVWADQAQSDSQG
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Known secondary structure (DSSP) SSSSS

TTB



TTST
SSSGGG
TTS

T

TTTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence STTTATRNALPEHPNALAFQVSVVEASAYKPNSTNSSPYLHLVKPKKVTQSDKLDDDLKNLLDPNQVRTK
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Known secondary structure (DSSP)





S
TT





GGGG







TTSS







GGG


GGGS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LRQSFGTDHSTQPQPQSLKTTTPVFGTSSGNLSSVLSLSPVEKVSGWLVGQLPTNNLAPNTNTGNDVVGV
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Known secondary structure (DSSP)





SS

S




SSTTB



TT



SS



S
SSTTTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence GRLSESNAAKMNDDVDGIVRTPLAELLDGEGQTADTGPQSVKFKSPDQIDFNRLFTHPVTDLFDPVTMLV
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Known secondary structure (DSSP)

GGGSS

S

SS
TT
S



SS
SS


GGGS
TTS
GGGSTTTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YDQYIPLFIDIPASVNPKMVRLKVLSFDTNEQSLGLRLEFFKPDQDGDFLPLLTASSQGPQTLFSPFNQW
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Known secondary structure (DSSP)
GGG

TTS
GGGTTTT
SS




TTSBTTBS


S

 .........
Sequence PDKHHHHHH
Predicted secondary structure




SS confidence








Known secondary structure (DSSP)

S






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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