Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ppjB_

Fold library idPDB HeaderMoleculeTitle
c6ppjB_3.50PDB header: dna binding proteinChain: B: PDB Molecule: uvrd/rep helicase;


Added to library: Sat Nov 23 09:06:04 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLGLTFTRKAAGQLLRRVRTRLAR
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
TTTS

SS

TTS
TSS

TTSSST
 .........80.........90.........100.........110.........120.........130.........140
Sequence LASDESATVSTYHAFAGTLLREHGLLLPVEPDTRLLSETELWQLAYDVVCAHPGHLDTEKTPAAVTAMVL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)






SGGGTT

SS


SSTTTTTTTT

S

S

S
TTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RLSGALAEHLVDTDQLRXXXXXXXXXXXLLRMLATQTERTELVPLIDALHQRMRAEKVMDFGMQMAAAAR
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TTTT
TTT



SSSGGGSTTTTTT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LAARFPQVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFGGGADDGLALTAVGDPIQSINLPRFTTDFPY
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)

S
SGGG

GGGTTTTTTTS
SSS
SSS


GGG



TTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence SDGTPAPTLELRTXXXXXXXXXXXXXXXXTIRCALLNNVAAERDWVADHLARAYHGATAAVLVRRNADAA
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) SSS









SBSTT

SSGGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PMAEALTARGVPVEVVGVAGLLAVPEVADLVAMLRLIADPTAGSAVMRILTGPRWRFGARDIAALWRRAV
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTT


STTSSTTSTTT
TT
TSSSS


 .........430.........440.........450.........460.........470.........480.........490
Sequence ELDGTADIVAQAAPDADTACVADAICDPGDAERYSPAGYERIVALGRELTMLRAHLGHPLPELVAEVRRV
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)


TTSSSTT




STTSSSS


TTSS
STTTTTGGGS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LGLDAEARAARPVAAGWAGTENLDRFSDLVSDFAGASVSALLAYLDAAVEVHDRVQILTVHAAKGLEWQV
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TTTTS
SSS
S


TT



SSSSSSTTT


STTS

S


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence VAVPHLSARVFPSTWLTDASDLPPLLRGDKISDHKKSLDQRRVDEERRLLYVAITRAEDTLLLSGHHWGF
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)



TTTTT

TTTSTTS

GGGS


TTTTTTTTT
SS
SB

 .........640.........650.........660.........670.........680.........690.........700
Sequence LCELKTILELRDQVVEALWPPVADHVHRGAQLVAAAMAGQEGWAADVDALLAERERPXXXXXXXXXXXXX
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)
T









SS






S
T




S


SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence XXXXXXXXXXXXXXXXXXXXHALLGTTFHEWVQRYFHAERLFDLDDVEESLAELQDAFVKSPWAARTPVE
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TTT
TT
S






TT





S



TTTTS

SB
 .........780.........790.........800.........810.........820.........830.........840
Sequence VEVPFDMVLGETVVRGRIDAVFATMVLAWKTGDPKEHAAVQLAVYRLAWAAMAAFHYVRSGXXXXXXXXX
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) SS
SSS

B



B

B

S


TTT



B
SS








TT
 ........
Sequence XXXXXXXX
Predicted secondary structure







SS confidence







Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D