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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6p3yB_

Fold library idPDB HeaderMoleculeTitle
c6p3yB_2.57PDB header: rna binding proteinChain: B: PDB Molecule: apolipoprotein b mrna editing enzyme, catalytic peptide-


Added to library: Sat Feb 15 08:32:13 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QIRNMVEPMDPRTFVSNFNNRPILSGLDTVWLCCEVKTKDPSGPPLDAKIFQGKVYPKAKYHPEMRFLRW
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Known secondary structure (DSSP)
S

B
S


S

TT

SSTTS

SSSS
GGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence FHKWRQLHHDQEYKVTWYVSWSPCTRCANSVATFLAKDPKVTLTIFVARLYYFWDPDYQQALRILAEAGA
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Known secondary structure (DSSP) TTS







TT
TTTTST
 .........150.........160.........170.........180.........190.........200.........210
Sequence TMKIMNYNEFQDCWNKFVDGRGKPFKPWNNLPKHYTLLQATLGELLRHLMDPGTFTSNFNNKPWVSGQHE
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Known secondary structure (DSSP)

B


S





TT

B


S


S


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TYLCYKVERLHNDTWVPLNQHRGFLRNQLCFLDLIPFWKLDGQQYRVTCFTSWSPCFSCAQEMAKFISNN
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Known secondary structure (DSSP) SSSS
GGG



GGGGS
TTTS
SS



S
 .........290.........300.........310.........320.........330.........340.........350
Sequence EHVSLCIFAARIYDDQGRYQEGLRTLHRDGAKIAMMNYSEFEYCWDTFVDRQGRPFQPWDGLDEHSQALS
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Known secondary structure (DSSP) TT



SSSTT


B

TT





TT
 .........360..
Sequence GRLRAILQNQGN
Predicted secondary structure

SS confidence











Known secondary structure (DSSP)

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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