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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6nyjB_

Fold library idPDB HeaderMoleculeTitle
c6nyjB_3.20PDB header: toxinChain: B: PDB Molecule: vacuolating cytotoxin autotransporter;


Added to library: Sat Mar 30 08:20:56 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LLGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAATHYWIKGGQW
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Known secondary structure (DSSP)


SS





S




SSGGG
TT



STTTTGGGS



SSS
S

SSSSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence NKLEVDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNILIDN
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Known secondary structure (DSSP)


SS

SB






SB






TT
B

S
SSS





SS






SB



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence FLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYDGATLNLASNSVKLNGNVWMGRLQYVGAYL
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Known secondary structure (DSSP)
S

SSSSSSS







SSB
B

SS


TT



SSS
B

SS

SSSS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence APSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKQKTEVQP
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Known secondary structure (DSSP)


B

BB
TT

S

S

SSS

B



S


TT
B



TT









 .........290.........300.........310.........320.........330.........340.........350
Sequence TQVIDGPFAGGKDTVVNIDRINTKADGTIKVGGFKASLTTNAAHLNIGKGGVNLSNQASGRTLLVENLTG
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Known secondary structure (DSSP)










TT




S


SS




S
TT
B




SS

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence NITVDGPLRVNNQVGGYALAGSSANFEFKAGVDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNG
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Known secondary structure (DSSP)

S
B
BTTBSS



SS

BSTTTS

B
S




BSB

BB
SSB


S

TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GFNTLDFSGVTNKVNINKLITASTNVAVKNFNINELIVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGT
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Known secondary structure (DSSP) B
B

B
TT

SB


S
SSB

B
SS

BS



TT

S



SS
S




 .........500.........510.........520.........530.........540.........550.........560
Sequence RSIFSGGVKFKSGEKLVIDEFYYSPWNYFDARNIKNVEITRKFASSTPENPWGTSKLMFNNLTLGQNAVM
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Known secondary structure (DSSP) SSS

S
S



TT


TT
S
S

S
SS


S



B
S


TT

 .........570.........580.........590.........600.........610.........620.........630
Sequence DYSQFSNLTIQGDFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNT
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Known secondary structure (DSSP)
TTS

BB
SB

S


TTT





BSSB




B
TTTSSB

S
TTS

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence EHVLLKAKIIGYGNVSTGTNGISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACGMAIGNQSMVNN
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Known secondary structure (DSSP)
S


SSSSSSSS



GGGTB

TTSSSSSTT
TTTTS
 .........710.........720.........730.........740.........750
Sequence PDNYKYLIGKAWKNIGISKTANGSKISVYYLGNSTPTENGGNTTNLPTNT
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Known secondary structure (DSSP) GGG

S
SS
TT

BTT






SSSS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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