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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6m71A_

Fold library idPDB HeaderMoleculeTitle
c6m71A_2.90PDB header: viral proteinChain: A: PDB Molecule: sars-cov-2 nsp12;


Added to library: Sat Apr 4 08:18:19 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VYRAFDIYNDKVAGFAKFLKYFVVKRTFSNYQHEETIYNLLKDCPAVAKHDFFPHISRQRLTKYTMADLV
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Known secondary structure (DSSP)

SSS









T
S
TTB







S

SSB
 .........80.........90.........100.........110.........120.........130.........140
Sequence YALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRN
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Known secondary structure (DSSP) S

SSS
TTSS
GGGGGSTTSS
SSS
TTGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence AGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKW
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Known secondary structure (DSSP) TT

GGGSBTTS
B



S


TT



TTTTTGGGGBTTS
TTS
B


 .........220.........230.........240.........250.........260.........270.........280
Sequence DLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGV
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Known secondary structure (DSSP)
TT




TT

S


SSTTS
SSGGGS
GGGSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence PFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQ
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Known secondary structure (DSSP) TTT

S



SBS


S
SS


TT
SS

SSS


B
 .........360.........370.........380.........390.........400.........410.........420
Sequence TVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK
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Known secondary structure (DSSP)
B



TT
S
TT
SS



B


B
SBTGGGGG






 .........430.........440.........450.........460.........470.........480.........490
Sequence YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI
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Known secondary structure (DSSP) TTTS





GGG




TTS


TTGGGT

S
TTS







 .........500.........510.........520.........530.........540.........550.........560
Sequence SAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD
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Known secondary structure (DSSP) BSS




T

SSSB

S

STTTTSS
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA
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Known secondary structure (DSSP)
TT

TT
SSS

TS
TT

S


TTSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence YANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMIL
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Known secondary structure (DSSP) SS
TTS


SSS

S

 .........710.........720.........730.........740.........750.........760.........770
Sequence SDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVY
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Known secondary structure (DSSP) TTTSS

S



TTS



SSS

S
SSS

SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELMLT
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Known secondary structure (DSSP)


SSTTS
GGGGGSS



S
 .........850.
Sequence NDNTSRYWEPE
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Known secondary structure (DSSP) SGGGS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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