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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6kleA_

Fold library idPDB HeaderMoleculeTitle
c6kleA_4.50PDB header: viral protein/rnaChain: A: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat Mar 21 08:44:51 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DEYVQELKGLIRKHIPERCEFGHQKVTFLSQVHPSPLLTEGFKLLSSLVELESCEAHACQANTDQRFVDV
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Known secondary structure (DSSP)

STTS



ST


TT

SS


 .........80.........90.........100.........110.........120.........130.........140
Sequence ILSDNGILCPTLPKVIPDGFKLTGKTLILLETFVRVNPDEFEKKWKADMSKLLNLKHDLQKSGVTLVPIV
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Known secondary structure (DSSP) TTTSS










STT
SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DGRSNYNNRFVADWVIERIRWLLIEILKASKSEDQEYQRLIHSLSNVKLENLEHLKRNSLDYDERLNESL
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Known secondary structure (DSSP) SS


SSS
SSSS



S








S





SSTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FIGLKGDIRESTVREELIKLKLWFKDEVFSKGLGKFKLTDRRELLESLSSLGAHLDSDVSSCPFCNNKLM
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Known secondary structure (DSSP) SSS





STTTTT

S


SS
SSSS

S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence EIVYNVTFSCVERSNIEKHYLSVLSLCNKIKGLKVFNTRRNTLLFLDLIMVNLMVDISDSCQDAIESLRK
Predicted secondary structure
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Known secondary structure (DSSP) TT




SS
STTSSSTTTTTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SGLIVGQMVMLVNDRVLDILEAVKLIRKKIGTNPNWVKNCSKILERSHPEIWHHLSTLIKQPDFNSLISI
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Known secondary structure (DSSP) SSS

TTS


SSSB


SSSSTTSSSSTT
TTTSTT
SSSSS



S
SS


TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence AQHLVSDRPIMRYSKICRHKLFQEMSSFEQMRLFKTLSSISLSLINSMKTSFSSRLLVNEFGNVRLRECY
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Known secondary structure (DSSP) S






B








GGGS
SSTS
SS


S




B


SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence AQRFYLAESLVGFLFYQKTGERSRCYSVYLSDNGVMSEQGSFYCDPKRFFLPVFSDEVLAGMCEEMTSWL
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Known secondary structure (DSSP)
SSS



SSS
SSS

GGG

TTTT
SSTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence DFDTGLMNDTGPILRLLVLAILCSPSKRNQTFLQGLRYFLMAFANQIHHIDLTSKLVVECKSSSEVVVQR
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Known secondary structure (DSSP)
SSTTTT


SSSTTGGGGT




TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LAVGLFIRLLSGESDASLFFSRRFKYLLNVSYLCHLITKETPDRLTDQIKCFEKFIEPKVKFGCAVVNPS
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Known secondary structure (DSSP) SSS

SSSS
TS



S
ST

B



 .........710.........720.........730.........740.........750.........760.........770
Sequence LNGKLTVDQEDIMINGLKKFFSKSLRDTEDVQTPGVCKELLNYCVSLFNRGKLKVSGELKNNPFRVVIPK
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Known secondary structure (DSSP) SSS


T


SSSS
SSSS



TTTTTSSS




S
S






 .........780.........790.........800.........810.........820.........830.........840
Sequence LDELGNILSTYDKEKLVSACVSSMAERFKTYNLDPDSTDYLILKNLTGLEEQVESFNEIKHDVQVALAKM
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Known secondary structure (DSSP) TT

S
SS
TT




SSS


 .........850.........860.........870.........880.........890.........900.........910
Sequence ADNSPFGVMKEIRAEVSLHEVKDFDPDVLPPEVYKELCDAVYKSSEKCNFFLEGVLDVCPLGLLLKNLTT
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Known secondary structure (DSSP) T






SSSSSSSSSSGGG

SSSS
T



TT

SS

TT

TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence SSYVDEEYFMCFKYLLIQGHFDQFTNAALRNLCFYSEDSPTEFTSISSNSGNLKFGLSYKEQVGSNRELY
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Known secondary structure (DSSP) SSS
TTTT


TTTS

TTT

TTS
SS

SS

SS
S



SSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VGDLNTKLMTRLVEDFSEAVGNSMKYTCLNSEKEFERAICDMKMAVNNGDLSCSYDHSKWGPTMSPALFL
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Known secondary structure (DSSP)

SSB
SS
T
BTTSTTT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ALLQMLELRTPVDRSKIDLDSVKSILKWHLHKVVEVPINVAEAYCIGEEFFHQTMQLNGQIPSHIMSVLD
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Known secondary structure (DSSP) S




TTT





T





SS
TT




B
S

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence MGQGILHNTSDLYGLITEQFLCYALDLLYDVIPVSYTSSDDQITLIKTPSEWLEMICFHEFLSSKLNKFV
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Known secondary structure (DSSP)

TTTSS
S
SS



TTTT

B
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SPKSVIGTFVAEFKSRFFVMGEETPLLTKFVAAALHNVKCKTPTQLSETIDTICDQCIANGVSTKIVTRI
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Known secondary structure (DSSP)
TT

SS
SSS

TT


S



SST


SS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SKRVNQLIRYSGYGETPFGAIEDQDVKDWVDGSRGYRLQRKIEAIFHDDKETSFIRNCARKVFNDIKRGR
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Known secondary structure (DSSP) TT



SS
S

SS

S

SS


SS
TTSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence IFEENLINLIGRGGDEALTGFLQYAGCSEQEVNRVLNYRWVNLSSFGDLRLVVPTLIKTLQSKLSRSSVA
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Known secondary structure (DSSP) S
SSTT
STS

SSTT
B
SSSSS






TT



S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence SGFIGFCKSMGSKCVRDGKGGFLYIKEVYSGVSACTCEICALKPKIIYCNNSLNKVSQFSKPILWDYFSL
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Known secondary structure (DSSP) TTSS

SSSS
SS




SS


SSTTTSB
SGGGSSS
TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VLTNACELGEWVFSTVKEPQKNFFWAVKPKVVRQIEDQLGMNHVLQSIRRNYPVLFDEHLTPFMNDLQVS
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Known secondary structure (DSSP) B
SGGGS

B











BSS
S

SST
TSS
SSS
 .........1550.........1560.........1570.........1580.........1590.......
Sequence RTMDSGRLKFLDVCIALDMMNENLGIISHLLKTRDNSVYIVKQSDCALAHIRQSSYT
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Known secondary structure (DSSP)




SSS
TT

SSTTTSS

S
SS
T

B

S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
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