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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5v7vA_

Fold library idPDB HeaderMoleculeTitle
c5v7vA_3.90PDB header: protein transportChain: A: PDB Molecule: erad-associated e3 ubiquitin-protein ligase component hrd3;


Added to library: Sat Aug 19 08:45:44 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PWPEARHLLNTIAKSRDPMKEAAMEPNADEFVGFYVPMDYSPRNEEKNYQSIWQNEITDSQRHIYELLVQ
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Known secondary structure (DSSP)


S

S






S



S


TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SSEQFNNSEATYTLSQIHLWSQYNFPHNMTLAHKYLEKFNDLTHFTNHSAIFDLAVMYATGGCASGNDQT
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Known secondary structure (DSSP) S


TT

SS



TTTT


SSS
SSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VIPQDSAKALLYYQRAAQLGNLKAKQVLAYKYYSGFNVPRNFHKSLVLYRDIAEQLRKSYSRDEWDIVFP
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Known secondary structure (DSSP)




T
TSSS


S



 .........220.........230.........240.........250.........260.........270.........280
Sequence YWESYNVRISDFESGLLGKGLNSVPSSTVRKRTRRIIRIYYAALNDYKGTYSQSRNCERAKNLLELTYKE
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TTSSSS
SSSSSS












S

SSS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence FQPHVDNLDPLQVFYYVRCLQLLGHMYFTGEGSSKPNIHMAEEILTTSLEISRRAQGPIGRACIDLGLIN
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Known secondary structure (DSSP) TTS
SS
TT
SSSS

TTT



 .........360.........370.........380.........390.........400.........410.........420
Sequence QYITNNISQAISYYMKAMKTQANNGIVEFQLSKLATSFPEEKIGDPFNLMETAYLNGFIPAIYEFAVMIE
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Known secondary structure (DSSP) TS

TTTSTT
SSS

TTS

TTT
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence SGMNSKSSVENTAYLFKTFVDKNEAIMAPKLRTAFAALINDRSEVALWAYSQLAEQGYETAQVSAAYLMY
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Known secondary structure (DSSP)
SS

S
S
SSS
TTSS
TTTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence QLPYEFEDPPRTTDQRKTLAISYYTRAFKQGNIDAGVVAGDIYFQMQNYSKAMALYQGAALKYSIQAIWN
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Known secondary structure (DSSP)



SSS





TTT
SS
TT

S
 .........570.........580.........590.........600.........610...
Sequence LGYMHEHGLGVNRDFHLAKRYYDQVSEHDHRFYLASKLSVLKLHLKSWLTWIT
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Known secondary structure (DSSP) SS

SS

SSS
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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