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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ly9A_

Fold library idPDB HeaderMoleculeTitle
c5ly9A_1.65PDB header: immune systemChain: A: PDB Molecule: variant surface glycoprotein mitat 1.1;


Added to library: Sat Sep 23 08:22:51 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AERTGLKATAWKPLCKLTTELSKVSGEMLNEGQEVISNIQKIKAAEYKVSIYLAKNPETQALQQLTLLRG
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Known secondary structure (DSSP)
TT

B
TT
TT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YFARKTNGGLESYKTMGLATQIRSARAAAYLKGSIDEFLNLLESLKGGSENKCLVTTNADTAATRRETKL
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Known secondary structure (DSSP) T

BTTTB
SBBSSSTT
B

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DDQECALSMPETKPEAATRTELTQTGYPNLQHGGGGTANTFQPTTSTGTCKLLSGHSTNGYPTTSALDTT
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Known secondary structure (DSSP) TT


S










SSS
SS

TT


SSSS
SSS


SS
B
GGG


TTTSSSSSS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AKVLAGYMTIPNTQVEATLANMQAMGNGHKATAPAWHEAWEARNREAKAKDLAYTNETGNLDTQPTLKAL
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Known secondary structure (DSSP) GGGT
SSSS




SS

TT
T


TTSGGGS


SSGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence VKTLLLPKDNTEHNAEATKLEALFGGLAADKTKTYLDMVDAEIIPAGIAGRTTEAPLGKIHDTVELGDIL
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Known secondary structure (DSSP) TS
TT


TTSSSSGGGG

TTGGG
SS
GGG


 .........360........
Sequence SNYEMIAAQNVVTLKKNL
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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